Gene Rxyl_1927 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRxyl_1927 
Symbol 
ID4115543 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRubrobacter xylanophilus DSM 9941 
KingdomBacteria 
Replicon accessionNC_008148 
Strand
Start bp1946710 
End bp1947849 
Gene Length1140 bp 
Protein Length379 aa 
Translation table11 
GC content67% 
IMG OID638036712 
Productphage integrase 
Protein accessionYP_644686 
Protein GI108804749 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0252061 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGCAAGC GGGGCAACGG GGAGGGCTCG ATCTCTCGCC GCAAGAACGG CGGGTGGATG 
GGCCAGTACG TCGTGTACAC GGCAGAGGGC CGCAAGCGCA AGACCGTGTA CGGCAAGACG
CGGGCCGAGG TGGCGAAGAA GCTCAACAAG GCTCTCTCGG ACCGGGAGGA CGGGCTCTTC
TTCGACGCCG GCAACCTCAA GGTCGGCGAG TACATGGACC GCTGGCTCAG GGACAGCGTC
GAGGGCAACG TCGGTCCTCG GACTCTTGCA AACTACAAGC TGCAGGTCCG TCGGCACATC
AAGCCGGTGC TCGGGGAGAT CCAGCTAAAG ACCCTCACCC CGGCGCACGT CCAGGGTCTC
TACCGACAGA AGCTCGACGC CGGCCTCGCC CCTTCGAGCG TCCGCTACAT CCACGCGGTC
CTCCACAGGG CGCTCACGCA GGCGCTCCGG TGGGGACTGG TGCCCCGCAA TGTGTCCGAG
GCCGTTGACC TCCCCAAGCT CGTGAGCGAG GAGGTCGACG CCCTGACCCC CGAGGAGGCG
CGGAAGTTCC TCGACGCAGC GCGCGGGGAT AGGTTCGAGG CGCTGTACGT GGTGGCCGTG
ATGACGGGAA TGAGGCGTGG AGAGCTGCTG GGGTTGCGCT GGTCCGACAT CGACCTGGGC
CAGAACGCAC CCGCCACCCT ACGGGTCGGC CGCCAGCTCC AGAGGATGCG CGACGGGTCG
GGGCTGAAGT TCGTCGCGCC GAAGGGCGGC AAGGGGCGCA CCATCCGCCT TCCGAGCCGC
GCAGTGGAGG CGCTCAAGGC CCACCGGGCG CGTCAGGCGG AGGAGAGGTT GAAGGCCGGC
CCCCTCTACC GAGACGAGGG CCTCGTGTTC GCCTCCGAGG TCGGCACGCC GCTGGAGCCT
TCCAACATAG ACCGGCGCAG CTTCAAACCG CTGCTGAAGA AGGCGGGCCT GCCCGACATC
CGCTTCCACG ACCTCAGGCA CACCTGCGCA ACGGTGCTCC TCTCCCAGGG CGTCAACCCA
AAGTTCGTGC AGGAGCTCCT GGGCCACGCC GACATCAAGC TCACCTTGGG CACCTACTCG
CACTTTCTGC CGAGCATGGG AGATCAGACC GCAAACGCGA TGGAGAGCGC CCTGGGCTGA
 
Protein sequence
MGKRGNGEGS ISRRKNGGWM GQYVVYTAEG RKRKTVYGKT RAEVAKKLNK ALSDREDGLF 
FDAGNLKVGE YMDRWLRDSV EGNVGPRTLA NYKLQVRRHI KPVLGEIQLK TLTPAHVQGL
YRQKLDAGLA PSSVRYIHAV LHRALTQALR WGLVPRNVSE AVDLPKLVSE EVDALTPEEA
RKFLDAARGD RFEALYVVAV MTGMRRGELL GLRWSDIDLG QNAPATLRVG RQLQRMRDGS
GLKFVAPKGG KGRTIRLPSR AVEALKAHRA RQAEERLKAG PLYRDEGLVF ASEVGTPLEP
SNIDRRSFKP LLKKAGLPDI RFHDLRHTCA TVLLSQGVNP KFVQELLGHA DIKLTLGTYS
HFLPSMGDQT ANAMESALG