| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1927 |
|---|
| Symbol | |
|---|
| ID | 4115543 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | + |
|---|
| Start bp | 1946710 |
|---|
| End bp | 1947849 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638036712 |
|---|
| Product | phage integrase |
|---|
| Protein accession | YP_644686 |
|---|
| Protein GI | 108804749 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0252061 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAAGC GGGGCAACGG GGAGGGCTCG ATCTCTCGCC GCAAGAACGG CGGGTGGATG
GGCCAGTACG TCGTGTACAC GGCAGAGGGC CGCAAGCGCA AGACCGTGTA CGGCAAGACG
CGGGCCGAGG TGGCGAAGAA GCTCAACAAG GCTCTCTCGG ACCGGGAGGA CGGGCTCTTC
TTCGACGCCG GCAACCTCAA GGTCGGCGAG TACATGGACC GCTGGCTCAG GGACAGCGTC
GAGGGCAACG TCGGTCCTCG GACTCTTGCA AACTACAAGC TGCAGGTCCG TCGGCACATC
AAGCCGGTGC TCGGGGAGAT CCAGCTAAAG ACCCTCACCC CGGCGCACGT CCAGGGTCTC
TACCGACAGA AGCTCGACGC CGGCCTCGCC CCTTCGAGCG TCCGCTACAT CCACGCGGTC
CTCCACAGGG CGCTCACGCA GGCGCTCCGG TGGGGACTGG TGCCCCGCAA TGTGTCCGAG
GCCGTTGACC TCCCCAAGCT CGTGAGCGAG GAGGTCGACG CCCTGACCCC CGAGGAGGCG
CGGAAGTTCC TCGACGCAGC GCGCGGGGAT AGGTTCGAGG CGCTGTACGT GGTGGCCGTG
ATGACGGGAA TGAGGCGTGG AGAGCTGCTG GGGTTGCGCT GGTCCGACAT CGACCTGGGC
CAGAACGCAC CCGCCACCCT ACGGGTCGGC CGCCAGCTCC AGAGGATGCG CGACGGGTCG
GGGCTGAAGT TCGTCGCGCC GAAGGGCGGC AAGGGGCGCA CCATCCGCCT TCCGAGCCGC
GCAGTGGAGG CGCTCAAGGC CCACCGGGCG CGTCAGGCGG AGGAGAGGTT GAAGGCCGGC
CCCCTCTACC GAGACGAGGG CCTCGTGTTC GCCTCCGAGG TCGGCACGCC GCTGGAGCCT
TCCAACATAG ACCGGCGCAG CTTCAAACCG CTGCTGAAGA AGGCGGGCCT GCCCGACATC
CGCTTCCACG ACCTCAGGCA CACCTGCGCA ACGGTGCTCC TCTCCCAGGG CGTCAACCCA
AAGTTCGTGC AGGAGCTCCT GGGCCACGCC GACATCAAGC TCACCTTGGG CACCTACTCG
CACTTTCTGC CGAGCATGGG AGATCAGACC GCAAACGCGA TGGAGAGCGC CCTGGGCTGA
|
|---|
| Protein sequence | MGKRGNGEGS ISRRKNGGWM GQYVVYTAEG RKRKTVYGKT RAEVAKKLNK ALSDREDGLF
FDAGNLKVGE YMDRWLRDSV EGNVGPRTLA NYKLQVRRHI KPVLGEIQLK TLTPAHVQGL
YRQKLDAGLA PSSVRYIHAV LHRALTQALR WGLVPRNVSE AVDLPKLVSE EVDALTPEEA
RKFLDAARGD RFEALYVVAV MTGMRRGELL GLRWSDIDLG QNAPATLRVG RQLQRMRDGS
GLKFVAPKGG KGRTIRLPSR AVEALKAHRA RQAEERLKAG PLYRDEGLVF ASEVGTPLEP
SNIDRRSFKP LLKKAGLPDI RFHDLRHTCA TVLLSQGVNP KFVQELLGHA DIKLTLGTYS
HFLPSMGDQT ANAMESALG
|
|---|
| |