| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1866 |
|---|
| Symbol | |
|---|
| ID | 4117418 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 1891143 |
|---|
| End bp | 1891940 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638036654 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_644628 |
|---|
| Protein GI | 108804691 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACCTGG GTCTCGAAGG CAAGGTGGCC TTCATCACGG GGGCAAGCAA GGGCATAGGC
AGGGAGTGCG CCCGGACCCT TGCCGAGGAG GGATGTACGG TGGTCATCAC CGCGCGCGGA
CGGGAGTTGC TGGAGCAGAC GGCACGGGAG ATCTCCGAGG CGACCGGTCA GAAAGTTGTG
CCGATTGCGG GCGATATGAG TAAGCCCGAG GACGTCGAGC GCGCGGTTGC AGAGACGATC
GACTCTTTCG GCAGGATAGA CATACTCATT ACCTGCGCCG GGAGCTCTCC TGGAGGCCTC
CTCGAAAATT TGACGGAAGA TCAATGGTTC AGCAGCCTCA ACCTTAAATT CATGGGCTAC
GTACGAGCCT GCAGGGCCGT GCTTCCGCTC ATGAGGGAGC AGGGAGGCGG AAGCGTGGTC
CTCGTGGTGG GAAACGACGG GCTCAAGCCC AGCTATTGGG AGACCACCGC TGGGGTCGCC
AATGCAGCCG ACATTAACTT CGCCTCCGCG ATGGCGGAAC AGTACGGGCG CTTCGGCGTG
CGCATAAACA CGGTGAATCC TGGTCCCGTC AACACTGACC GCTGGGAGGG ACTCGAGGAG
GCATTCGCGA GGGACAAGGG AATCTCTCGG GAGAGGGCTC ACGAGCTAAC AATAAACAGC
ATCCCGTTCG GGCGGATCTG CGAGCCCGAG GAGGTAGCTA ACTTGGTAGC CTTTCTTGCT
TCCCCGAGGG CGAGCTTCGT ACACGGTGCC CACGTCCCCA TCGACGGTGG GCAGCGCAAG
GCCCTAATGG ACCTCTAG
|
|---|
| Protein sequence | MDLGLEGKVA FITGASKGIG RECARTLAEE GCTVVITARG RELLEQTARE ISEATGQKVV
PIAGDMSKPE DVERAVAETI DSFGRIDILI TCAGSSPGGL LENLTEDQWF SSLNLKFMGY
VRACRAVLPL MREQGGGSVV LVVGNDGLKP SYWETTAGVA NAADINFASA MAEQYGRFGV
RINTVNPGPV NTDRWEGLEE AFARDKGISR ERAHELTINS IPFGRICEPE EVANLVAFLA
SPRASFVHGA HVPIDGGQRK ALMDL
|
|---|
| |