| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1818 |
|---|
| Symbol | |
|---|
| ID | 4117262 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | + |
|---|
| Start bp | 1842381 |
|---|
| End bp | 1843640 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 638036615 |
|---|
| Product | D-amino-acid dehydrogenase |
|---|
| Protein accession | YP_644589 |
|---|
| Protein GI | 108804652 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACGGCCT CCCCCGCCTC CCGCCCAGGG CACGTCGCGG TCGTCGGCGC CGGGATGCCC
GGACTGGCCA CCGCCTGGTT CCTGCAGGAG CGAGGCGTGC GGGTCACGGT CCTCGAGAGG
GAGCGGGTCG CGGCGGGGTC GTCGTGGGGG AACGCGGGCT GGCTCTCCCC CGCGCTCACC
GTGCCGCTCC CCGAGCCGGC GGTGCTCAGG TACGGCCTGC GGGCGGCGCT GGACCCGGCC
TCCCCCCTCT ACATCCCCCC GCGGGCCGAC CTCCGCCTCC TGCGGTTCCT CCTCGGATTC
GCCCGCCACT GCACGGCCCG CCGCTGGAGG GTCGCCATGA GCGCCTACGC GCCGGTGAAC
CGGCGGGCGC TCGAGGCCTT CGACGCCCTC GCGGACGGCG GCGTCGCCGA GCCGGTGCGC
GAGGCGGAGC CGTTCCTGGC CTGCCACGTC TCCACCGCGG ACCAGAAGGC CCTGCTCGAG
GAGCTGCGCC ACGTCGAGGC CGCCGGGCAG GAGGTCGAGT ACGAGCCGCT CACCGGCGCC
GAGGCCCGCG AGCTGGAGCC GGCGCTCTCC GAGGCGGTCG TGGCCGCGGT CCGCATCCGC
GGCCAGCGGT TCATCAACCC CGGCCGGTAC CTGCGGGCGC TCGCCGAAGC CGTCCGCGAC
CGCGGGGGCG ACCTCCGCGA GGGCGTGAGC GTGCGCGAGG TCCGGGACGA GGGCATGCGG
GTGGCCGTGG AGGCGGCGAG CGGCGAGGCG CTCCGCTTCG ACGCCGTGGT GCTGGCCAAC
GGCGCGTGGC TGAACCGCCT CGCCCGCCGC TTCGGCGTCC GCACCATCGT GCAGGCCGGC
CGCGGCTACA GCTTCAGCGT TCCGGTAGAG CAGATGCCCT CGGGGCCCGT CTACTTCCCG
GCCCAGCGCG TGGCCTGCAC GCCGCTCGGC GACCGGCTGA GGGTCGCCGG GATGATGGAG
TTCCGGGCGC CGGAGGAGCC GCTCGACCCC CGCCGCATCG CGGCGATCGT CGCCGCCGTC
CGCCCGCTGC TGCGCGGCGC CGCCTTCGAC GACCGCGCCG ACGAGTGGGT GGGATCGCGG
CCCTGCACCC CGGACGGGCT GCCCCTCATC GGCCCGACGG CCTCGCCACG GGTCTTCGTG
GCGGGCGGGC ACGGCATGTG GGGCATCGCC CTCGGCCCGC TCACCGGGGA GCTGCTCGCC
GAGGCGATCG CGACCGGCCG CACCCCCGCC GAGCTCACCC CGTTCCACCC CCTCCGCTGA
|
|---|
| Protein sequence | MTASPASRPG HVAVVGAGMP GLATAWFLQE RGVRVTVLER ERVAAGSSWG NAGWLSPALT
VPLPEPAVLR YGLRAALDPA SPLYIPPRAD LRLLRFLLGF ARHCTARRWR VAMSAYAPVN
RRALEAFDAL ADGGVAEPVR EAEPFLACHV STADQKALLE ELRHVEAAGQ EVEYEPLTGA
EARELEPALS EAVVAAVRIR GQRFINPGRY LRALAEAVRD RGGDLREGVS VREVRDEGMR
VAVEAASGEA LRFDAVVLAN GAWLNRLARR FGVRTIVQAG RGYSFSVPVE QMPSGPVYFP
AQRVACTPLG DRLRVAGMME FRAPEEPLDP RRIAAIVAAV RPLLRGAAFD DRADEWVGSR
PCTPDGLPLI GPTASPRVFV AGGHGMWGIA LGPLTGELLA EAIATGRTPA ELTPFHPLR
|
|---|
| |