| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1813 |
|---|
| Symbol | |
|---|
| ID | 4117257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 1838353 |
|---|
| End bp | 1839267 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638036610 |
|---|
| Product | RNA polymerase, sigma 28 subunit |
|---|
| Protein accession | YP_644584 |
|---|
| Protein GI | 108804647 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.130349 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGGTT TCGGTGAGGT CGAGCGGTCG GCGGTCCGGT CGCGCGAGGG GGCGCCGGCG
GAGGCCTGTT GCAGCGATCC GGAGCCCGAG ACCCCCGAGC TTCTGGCCGG GTACTTGGAC
CGCATAGGCA GATGGAGGCT CCTGACGCGC GACGGGGAGA TAGAGCTCTC CAGGAGGGCC
AAGAAGGGCG ACAGAAAGGC CCGCCAGAAG CTCATAGAGA AGAACCTGAG GCTCGTTGTC
TCGGTGGCCA AGAAGTACCG CGGCTACGGG CTGCCCTTCG AGGATCTCAT CCAGGAGGGC
AACATAGGGC TCATGAAGGC GGTCGAGAAG TTCGACCCCG AGCGGGGCTT TCGCTTCTCT
ACGTATGCGA CGTGGTGGAT AAGGCAGGCC GTGCAGCGGG CGGTTGCGGA CAAGGGCCGC
ACCATAAGGG TACCGGTGCA CATGACCGAG AAGATCCGCA AGGTCAGCCG CACCTTCAAC
GAGCTCTCTC TGGAGCTAGA GCGGGAGCCC ACCGACGAGG AGATAGCGCG CCGGCTGGAG
TGGGATGTGG AGGACGTGCG GCTGACCATA AGCGCAATGC CCGACGCCAC GAGCCTCGAC
CAGCCGGTCT CCAGCGAGGA GTCTGCCTCG GAGCTTGGGG ACTTCATCGA GGACGAGCGC
ACCTCCGACA CCCCCGACAC GGTGCTCAAG GAGCTTGAGA GCAGCCAGCT CAAGGAGGCC
ATAGAGCGGC TGCCGGAGCG GGCGCGCTAC GTGCTGGTGA GGCGCTACGG CCTCGACGAC
CGGGAGCCGG CGACGCTGGC GGAGCTTGGG GACGAGCTGA AGATCTCTAG GGAGCGGGTC
AGGCAGCTGC AGCGCGAGGC CGAGCGGCTG CTCAAGGCAG GGATCCGCCG GACGTCGCCT
CGCTCGATAA CGTGA
|
|---|
| Protein sequence | MPGFGEVERS AVRSREGAPA EACCSDPEPE TPELLAGYLD RIGRWRLLTR DGEIELSRRA
KKGDRKARQK LIEKNLRLVV SVAKKYRGYG LPFEDLIQEG NIGLMKAVEK FDPERGFRFS
TYATWWIRQA VQRAVADKGR TIRVPVHMTE KIRKVSRTFN ELSLELEREP TDEEIARRLE
WDVEDVRLTI SAMPDATSLD QPVSSEESAS ELGDFIEDER TSDTPDTVLK ELESSQLKEA
IERLPERARY VLVRRYGLDD REPATLAELG DELKISRERV RQLQREAERL LKAGIRRTSP
RSIT
|
|---|
| |