| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1798 |
|---|
| Symbol | |
|---|
| ID | 4117340 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 1821980 |
|---|
| End bp | 1823389 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 638036595 |
|---|
| Product | NADH dehydrogenase (quinone) |
|---|
| Protein accession | YP_644569 |
|---|
| Protein GI | 108804632 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0651] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.844444 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACGGGGT CGGCGGCGAG CCATGTCCTG CCCGTGCTGC CGGTCGGCAT ACCGTGGGTG
CTGGCCGCCG TGCTGGCCCT TCTGGACGGC CGGCGCCGGT GGGTCGGGCT CCTCGCCGCC
GGGGGGCTGG CAGCGAGCCT GGCCTCCCTG TTCTGGCTGG CCTCCGTGGT GCTGCGGGAG
GGGCCGGTCT CCACGGTCGC GGGCGGGTGG CCGGAGAACG TGGGCATCTC GCTGCGCGCC
GACGCTCTGG GCGCGGCCTT CGCGCTCGTC TCCGTCGGGG TGATCCTGGC CTCGCTGCTC
TACGAGCTCG CTCTCGGGGT GCGCTGGCGG GCCTTCCCGG CGCTGGTGCT GCTCGTCGCC
GCGGGGCTCA CGGGGCTCTT CCTCACCGGG GACGTCTTCA ACTTCTACGT GTTCTTCGAG
ATCTCCATGA CCGCCTCCTT CATCCTGACC GGCTACCGGG AGGCGGACTA CCAGGTGAGG
GGGGCCTTCG TCTTCGCGGT GGTCAACCTC CTCGGGTCGG TGGTGTTCCT CATCGGGATC
GCGGCGCTCT ACAGCATCAC CGGCAGCCTG GACATGCGGA TCATCGCCCA GAGGACGGAC
GTGCTGGAGC CGGTCTCGGT GATCGCCGTT GCGACCTTGA TCTTCGCGGC GTTCTTCTTG
AAGCTGGGCC TCTTCCCGTT CCACTTCTGG CTGCCGGCGG TCTACGTGGG CAGCCACCCG
CCGGTGGCCG CGATCCTCTC GGGCGCCCTG GCGAACATCG GGGGCTACGG CCTGCTGCGC
TTCGGCGCCG GCATCATGCC GCGCGAGCTG GAGCTCGGCT CGACGGCCGT GCTGGTCCTC
GGGAGCGCGA GCATAATCTA CGGGGCGCTG CAGGCGATCT CGCGCCGCGA CACCTCGGAG
GTGATGGCCT ACTCCGCGAT CGGGCAGGCC GGCTACGTCA TCTTGGCGCT GGGCGTCGCC
GGCCCCGTGG GGTACGCGGC GGCCGTCGTC TACTCGGTCG TGAACTCGCT GAACAAGGGG
ATCGTCTTCC TCGCCGCCGG GCTGCGCGGA CCGCTGGTCG GCGGGGCCTT CGCCGTCGGC
GCGTTCTCCA TCGCTGGCGT GCCCCCGGCG GCCGGGTTCG TCGCCAAGAT AGCGGTCTTC
AAGGCGGCCA TCGCCGAGGG GCCGCTCCTC GCTAGTTTGG CCCTGGTCGC CCTCGTCTTC
GTCGGCGGGG CGCTGTCCTT CCTGTACTCG TTCCAGGTCT ACCAGCGGCG CTTTATGAGG
CCGGGGGACG GGGGCAAGCC GGGCCCGCGG GCGGCGCGCT TGCTGGTGGC GGCTCTGGCG
GCCCTCGTGG TGCTCCTGGG GATCTGGCCG GAGCCGCTGG TCTCCTTGGG CGAGGCGGCG
GCCGCCGTGC TGGCGGGGGG CTCGGGATGA
|
|---|
| Protein sequence | MTGSAASHVL PVLPVGIPWV LAAVLALLDG RRRWVGLLAA GGLAASLASL FWLASVVLRE
GPVSTVAGGW PENVGISLRA DALGAAFALV SVGVILASLL YELALGVRWR AFPALVLLVA
AGLTGLFLTG DVFNFYVFFE ISMTASFILT GYREADYQVR GAFVFAVVNL LGSVVFLIGI
AALYSITGSL DMRIIAQRTD VLEPVSVIAV ATLIFAAFFL KLGLFPFHFW LPAVYVGSHP
PVAAILSGAL ANIGGYGLLR FGAGIMPREL ELGSTAVLVL GSASIIYGAL QAISRRDTSE
VMAYSAIGQA GYVILALGVA GPVGYAAAVV YSVVNSLNKG IVFLAAGLRG PLVGGAFAVG
AFSIAGVPPA AGFVAKIAVF KAAIAEGPLL ASLALVALVF VGGALSFLYS FQVYQRRFMR
PGDGGKPGPR AARLLVAALA ALVVLLGIWP EPLVSLGEAA AAVLAGGSG
|
|---|
| |