| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1726 |
|---|
| Symbol | |
|---|
| ID | 4116626 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 1754670 |
|---|
| End bp | 1755467 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638036524 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_644498 |
|---|
| Protein GI | 108804561 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0937598 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACTA ACGGAGATCC GCGCAGGTTC GACGGCAAGG TGGCCGTGGT GACCGGAGGG
ACCCAGGGGC TCGGCGAGAG CGTGGCGCTT CAGCTCGCCG AGCGGGGAGC AGCCGGGATC
GTTATCACGG GACGCAACGA GGAGCGGGGG CGCAGGGTGG CTGCTGTTTT GCGGAAGCTG
GGGGCGGAGC CGCTGTTCGT GGCCGCCAAT CTCGCTGATG TAGACGCCCC GTTCAGGATT
ATCGAGGCGG TGGACGAGGC GTTCGGCAGG GTGGACGTGC TCGCCAACTG CGCCGCCAAC
CCGGAGCGGG ACACCATCTG GGACAGCACA CCGGAGTTCT TCGACCGCAT GTTCGCCGTG
AACGTGCGGG CGCCGTACTT CCTGATCCAG GGAGCTGCCA GGATCATGCG CCGGGAGAAC
ATCCAGGGAA CCATCGTGAA CGTCATAAGC ATCTCGAGCC ACGGCGGCCA GCCGTACATC
TCCAGCTACT GCGCCTCGAA GGGTGCTCTG GCGACGATGA CGCGCAACGT GGCGCACGCG
CTGCTGCCCT ACCGGATACG GGTCAACGGC CTGAACCCGG GCTGGATGGC GACCCCCGGC
GAGAACGAGA CCCAGCGCAG GTTCCACGGT GCCCGGGAGG GCTGGATCGA AGAGGCCGGC
AAGACCCGGC CGTTCGGACG CCTGATCTTG CCGGAGGAGG CCGCCCGCGC GGTCCTCTTC
CTGGCCTCCG GGGAGTCGGG GCTGATGACC GGCGCCGTGG TGGACTACGA CCAGCAGGTG
ATAGGGGCGT ATGACTGA
|
|---|
| Protein sequence | MATNGDPRRF DGKVAVVTGG TQGLGESVAL QLAERGAAGI VITGRNEERG RRVAAVLRKL
GAEPLFVAAN LADVDAPFRI IEAVDEAFGR VDVLANCAAN PERDTIWDST PEFFDRMFAV
NVRAPYFLIQ GAARIMRREN IQGTIVNVIS ISSHGGQPYI SSYCASKGAL ATMTRNVAHA
LLPYRIRVNG LNPGWMATPG ENETQRRFHG AREGWIEEAG KTRPFGRLIL PEEAARAVLF
LASGESGLMT GAVVDYDQQV IGAYD
|
|---|
| |