Gene Rxyl_1721 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRxyl_1721 
Symbol 
ID4116621 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRubrobacter xylanophilus DSM 9941 
KingdomBacteria 
Replicon accessionNC_008148 
Strand- 
Start bp1749488 
End bp1750477 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content63% 
IMG OID638036519 
Productperiplasmic binding protein/LacI transcriptional regulator 
Protein accessionYP_644493 
Protein GI108804556 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1879] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.525383 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGGGTTG TGAAGTGGGT GTTTGTGTTA GCCGTTATGC TGGTGGCGTT GGTGGGGTGC 
GGTCAGCAGG GAGGTCAGCA AGAGGGGCAG GGTGGTGAGG GGAGCGAGAA GGGGCTAGTT 
CCAAGGGAGG AGATCAACAT CGAGTTCGTT ACCCACGCCT CGCCCGACCC GTTCTGGAGC 
GTGGTGCAGA ACGGCGTGAA CCAGGCCGCC GAGGACATGG GTGTGGAGGT CAACTACCGT 
GAGCTGGACT CCTACGACAT ACCCCAGCTG CAGAGGAACC TGGAGGCCGC CATCGCCGCC 
GAACCGGACG GCATGGTCGT CTCCATACCC GACCCGGACG CGCTCAACGA CAAGATACGA 
GAGGCGACCG AGAGCGGGAT CCCCGTCGTG GTCATAAACG CCGGCGAAAA CGATTGGAGG 
GACGTCGGGG CGCTCACCTA CGTAGGGCAG ACGGAGTACG ACGCCGGGGT CGCCGCTGGG 
GAGCGCATGG CTCAGGCCGG GGTGCAAAGC GCGATCTGCA TAAACCACGA GCAGGGCAAT 
ATCACCCTGG ACCAGCGCTG CAATGGCTTC GAGAAGGGGC TGGGAGGACA GGTGAAGCAG 
GTGGCCGTGC AGCCCGACCC GACCGCCGCG CGCAACGGCA TCAAGACCGC GCTCCGACAG 
AATCCGGACG TCGATGGCCT GCTCACGCTG AACCCCGGCA TCGCCGACCA AGCGCTCAGG 
GCACTTGAGG AGTCGGGCAG GAGCGGGGAC GTCACCTTCG CCACCTTCGA CCTCTCGCCC 
AGCGTTCTGC GGGCTGTCAG CAGGGGAGAG ATGTTGTTCG CCACCGACCA GCAACAGTGG 
CTACAGGGGT ATTTGCCGAT TGTTCTTCTG ACCAATTACA TACAGTACGG GGTGAGGCCG 
GTGAACACGG AGATACCAAC CGGTCCAGCA TTTATCACTA AAGAAAACGC CGAGCAGGTC 
ATCGAGCTGA GCAGGCAGGG CATACGTTAG
 
Protein sequence
MRVVKWVFVL AVMLVALVGC GQQGGQQEGQ GGEGSEKGLV PREEINIEFV THASPDPFWS 
VVQNGVNQAA EDMGVEVNYR ELDSYDIPQL QRNLEAAIAA EPDGMVVSIP DPDALNDKIR 
EATESGIPVV VINAGENDWR DVGALTYVGQ TEYDAGVAAG ERMAQAGVQS AICINHEQGN 
ITLDQRCNGF EKGLGGQVKQ VAVQPDPTAA RNGIKTALRQ NPDVDGLLTL NPGIADQALR 
ALEESGRSGD VTFATFDLSP SVLRAVSRGE MLFATDQQQW LQGYLPIVLL TNYIQYGVRP 
VNTEIPTGPA FITKENAEQV IELSRQGIR