Gene Rxyl_1720 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRxyl_1720 
Symbol 
ID4116503 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRubrobacter xylanophilus DSM 9941 
KingdomBacteria 
Replicon accessionNC_008148 
Strand
Start bp1748408 
End bp1749430 
Gene Length1023 bp 
Protein Length340 aa 
Translation table11 
GC content67% 
IMG OID638036518 
Productinner-membrane translocator 
Protein accessionYP_644492 
Protein GI108804555 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0384708 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGCAAG CTACAGTAGG CGAGCGCGTG CGGGAGGTGG GGTTCCTGCG CAGGCAGCTC 
ACCCGCCCGG AGCTCGCCGC GATCGCCGGC GCTATACTGG TCTTCGCGTT CTTCGCGATC
ACGGCGGGGG ACCAGGGGTT CCTGACCTTC GGCGGCACGA TCAGCTACCT GCAGGTCGCC
GCGCAGCTCG GGATCGTCGC GGTGCCGGTG GCGATGCTGA TGATCGCCGG GGAGTTTGAC
CTCTCCGTGG GCTCGATGGT AGGGGCGGCG GGGATCATCA TCGCCATCAC CGTTACGCAG
TACGGCTGGC CGCTGTTTGC CGGGGTGCTC CTGGCGTGCG CGGTGGCGCT CCTCGTCGGG
TTTTTCAACG GCTACCTGGT GATAAAGACC GGGCTGCCGT CGTTTATCGT GACGCTCGCG
ATGCTCTTCG CGCTCAGGGG TCTCACCATC GGGTTCTCGC GCCTGATCAC GGGCCGCACA
CAGATCGGCG GCCTCAGCGA CGCCACCCAG GGAGACGTCC TCTTCCCCAT CTTCGCCGGT
GAGATAGCCG GGATACCCGT CTCGGTCTTC TGGTGGATCG GACTCGCCAT ACTCGGCACT
TGGGTGCTGC AGCGGACGGC GTTCGGGAAC TGGATCTTCG GGAGCGGCGG GGACCCGGTC
GCCGCGCGCA ACGTCGGGGT GCCGGTGAAC CGCGTGAAGA TCATACTCTT TATGTGCACC
GCGCTCTCGG CGGCCCTCCT GGCGACGATC CAGGTGATGG ACGCGGGCTC GGCGGACGTG
CTGCGCGGCG AGCTGCTGGA GCTTCAGGCG ATAGCCGCCT CGGTCATCGG CGGGGTCCTC
CTCACCGGCG GCTACGGCTC GGTCGTCGGG GCTGTCTTCG GGGCGCTCAT CTTCGGGATG
GTGCAGCAGG GCATCTTCTT CACCGGGGTC AACACCGACT GGTTCCTGGT CTTCGTCGGG
GTGATGCTCC TCGTCGCCGT CCTGTTCAAC AACGTGATCC GCAACCGCGC ATCTAAGGGG
TAG
 
Protein sequence
MAQATVGERV REVGFLRRQL TRPELAAIAG AILVFAFFAI TAGDQGFLTF GGTISYLQVA 
AQLGIVAVPV AMLMIAGEFD LSVGSMVGAA GIIIAITVTQ YGWPLFAGVL LACAVALLVG
FFNGYLVIKT GLPSFIVTLA MLFALRGLTI GFSRLITGRT QIGGLSDATQ GDVLFPIFAG
EIAGIPVSVF WWIGLAILGT WVLQRTAFGN WIFGSGGDPV AARNVGVPVN RVKIILFMCT
ALSAALLATI QVMDAGSADV LRGELLELQA IAASVIGGVL LTGGYGSVVG AVFGALIFGM
VQQGIFFTGV NTDWFLVFVG VMLLVAVLFN NVIRNRASKG