Gene Rxyl_1718 details

Gene Information

• Locus tag: Rxyl_1718
• ID: 4116501
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rubrobacter xylanophilus DSM 9941
• Kingdom: Bacteria
• Replicon accession: NC_008148
• Strand: -
• Start bp: 1745684
• End bp: 1747564
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 638036516
• Product: thiamine pyrophosphate enzyme, central region
• Protein accession: YP_644490
• Protein GI: 108804553
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG3962] Acetolactate synthase

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGGCACGG TGCGTCTGAC GGCCGCGCAG GCTCTGGTGC GTTTTCTTTG CGCCCAGCAC 
GTCGAGCGCG ACGGCAACGA GCAGCGCTTC TTCGCCGGCT GCTTCGGGAT CTTCGGTCAC 
GGCAACGTCG CGGGCGTGGG GCAGGCGCTG CAGCAGTACG CGGACGACCT CACCTACTAC 
CAGGCCCGCA ACGAGCAGGC GATGGTCCAC ACCGCCGCAG CCTACGCCCG CCACAAGAAC 
CGCCTGCAGA CGCTCGCCTG CACCTCCTCC ATCGGCCCCG GCGCGACCAA CATGGTGACC 
GGCGCGGCCC TCGCCACGAT AAACCGCCTC CCCGTGCTGC TCCTGCCGGG CGACATCTTC 
GCCTCGCACC GGCCCGACCC GGTGCTGCAG CAGCTCGAGG CGCCCCACGA CGGGAAGCTC 
TCGGTCAACG ACTGCTTCCG CCCCGTCTCC CGCTACTGGG ACAGGATAGA GCGGCCGGAG 
CAGGTGGTCC CGGCGGCCAT GCAGGCCATG CGGGTGCTCA CCAGCCAGGC GGAGACCGGG 
GCGGTCACCC TGGCGTTCCC CCAGGACGTG CAGGCCGAGG CCTGCGACTA CCCGGAGGGG 
TTCTTCAGGA AGCGGGTGTG GCACATACCG CGCCCGCTGC CGGAGAGGGA GCTGCTGGAG 
CGGGCGGCCG CCATGATCCG CGGGTCGCAG CGGCCCATGA TCGTCTCGGG CGGCGGCACG 
ATCTACTCGG AGGCCACCGA CGCCCTGCGC CGCCTCGCCG AGCAGACCGG CATCCCGGTG 
GGCGAGACGC AGGCGGGCAA GGGCTCGCTC CCCTACGACC ACCCGTGCGC CCTCGGGGCC 
GTGGGCGCGA CCGGCACCTT CGCCGCGAAC CGGGTGGCGG CCGAGGCCGA CCTCGTCATC 
GGGGTCGGCA CCCGCTACAC GGACTTCACC ACCGCCTCCA AGACCGCCTT CAGGAACCCG 
GAGGTGAGGT TCGTGAACAT AAACGTCGCG GACTTCGACG CCCACAAGCA CGCCGGGCTC 
GCGCTGGTGG GCGACGCCCG CGCCACCCTC GAGGCCCTCT CCGGTCTGCT GGCCGGCTAC 
GAGGTCGCGC CCGAGTACCG GGAGCGCAGC GAGCGCCTGA ACCGGGAGTG GGACCGGGAG 
GTGGAGCGGC TCTACGCCCT CAACCGGGGG CCGCTCCCCG CGCAGAGCGA GGTCATCGGG 
GCGGTCAACG CAGCCGCCGG GCCCCGCGAC GTGGTGGTGT GCGCGGCGGG CTCCATGCCC 
GGGGAGCTGC ACAAGCTCTG GCGCGCCCGC GACCCCAAGC AGTACCACGT GGAGTACGGC 
TACTCCTGCA TGGGGTACGA GATCGCGGGC GGCCTCGGGG TGAAGATGGC CGACCCCTCC 
CGGGAGGTCT ACGTGATGGT CGGCGACGGC TCCTACCTGA TGATGAGTTC CGAGATCATC 
ACCTCCATCC AGGAGGGCCG CAAGCTCACC ATCGTGCTGG TGGACAACGC GGGCTTCGCC 
TCCATCGGCT CCCTCTCCCG CTCGGTGGGC TCGGACGGCT TCGGCACCCA CTACCGCTAC 
CGGAAGGACG GCTCCCTCGG GCTGGACTCG GAGAAGGCCC CGGGAGAGGT GCTGCCGGTG 
GACCTGGCGA AGAACGCCGA GGGCTACGGG GCGCACGTGA TGAGCGCCCG CACCATCCCG 
GAGCTGGAAG AGGCCCTGCA GGAGGCCCGG CGCCTGGAGC GGACGGTCGT GATCCACGTC 
CCCGTGGACC GCTACGCGGG GGTGCCGGAC TACGGGGCCT TCTGGGATGT GCCGGTCGCC 
GAGGTCTCGG AGATGGAGCC CGTACGCGCG GCCCGCGAGC AGTACGATAA GAACCGCCGC 
ATGGAGCGGT GGTACCTCTA G 

 

Protein sequence

MGTVRLTAAQ ALVRFLCAQH VERDGNEQRF FAGCFGIFGH GNVAGVGQAL QQYADDLTYY 
QARNEQAMVH TAAAYARHKN RLQTLACTSS IGPGATNMVT GAALATINRL PVLLLPGDIF 
ASHRPDPVLQ QLEAPHDGKL SVNDCFRPVS RYWDRIERPE QVVPAAMQAM RVLTSQAETG 
AVTLAFPQDV QAEACDYPEG FFRKRVWHIP RPLPERELLE RAAAMIRGSQ RPMIVSGGGT 
IYSEATDALR RLAEQTGIPV GETQAGKGSL PYDHPCALGA VGATGTFAAN RVAAEADLVI 
GVGTRYTDFT TASKTAFRNP EVRFVNINVA DFDAHKHAGL ALVGDARATL EALSGLLAGY 
EVAPEYRERS ERLNREWDRE VERLYALNRG PLPAQSEVIG AVNAAAGPRD VVVCAAGSMP 
GELHKLWRAR DPKQYHVEYG YSCMGYEIAG GLGVKMADPS REVYVMVGDG SYLMMSSEII 
TSIQEGRKLT IVLVDNAGFA SIGSLSRSVG SDGFGTHYRY RKDGSLGLDS EKAPGEVLPV 
DLAKNAEGYG AHVMSARTIP ELEEALQEAR RLERTVVIHV PVDRYAGVPD YGAFWDVPVA 
EVSEMEPVRA AREQYDKNRR MERWYL