Gene Rxyl_1681 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRxyl_1681 
Symbol 
ID4116640 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRubrobacter xylanophilus DSM 9941 
KingdomBacteria 
Replicon accessionNC_008148 
Strand- 
Start bp1700841 
End bp1701875 
Gene Length1035 bp 
Protein Length344 aa 
Translation table11 
GC content69% 
IMG OID638036480 
Productputative secreted solute-binding lipoprotein 
Protein accessionYP_644454 
Protein GI108804517 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1879] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID[TIGR02637] rhamnose ABC transporter, rhamnose-binding protein 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.156663 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAGAGG GCTTCGGCAA GAGGAGGGTG TTGCGGGCGC TCCTGCCGCT CGCCGCCGCC 
GCGCTGCTCG CGGCCTGCGG GGTCGGCCAG CAGCCGCAGC AGGGCGGCGA GCAGGGAGGG 
GGCGAGGGGC CGAACAAGAT CTGCATGATG CCCAAGCTCG TCGGCATCCC GTACTTCAAC 
GCCGCCGAGA AGGGGGCGAG GGAGGCCGCC AGGGAGCTCG GCGTGGACCT GGTCTACGAC 
GGTCCCACCG AGGCGCTGGC CGCCGACCAG GTGGAGTTCA TCGAGCAGTT CATCCAGCAG 
CAGTGCGACG CCATCACCGT GGCGGCCAAC GACCCCGACG CCCTGGCCCC GGCGATGAAG 
AAGGCCAAGC AGGCCGGGAT AGCCACCGGC GCCTGGGACG CCGACGTGGC AGAGGACGCC 
CGCGACGTCT TCGTGAACCA GGCCACCTTC CAGGCCATCG GCTACAAGCT GGTGGACGTC 
ATGGCCGAGC AGACCGGCGG GAAGGGCAAG TTCCTGGTCG TCACCGGGTC GCTCACCGCC 
CCCAACCAGA ACGCCTGGCT GAAGGAGATG CGGGAGCGGA TGCGGCAGAA GTACCCGCAG 
ATGGAGATCG CCTCCGTCCA GCCGGGCGAG GAGGATTTGC AGAAGGGCAT AGACATCACC 
AAGGACTACC TCCGGGCGAA CCCGGACACC GCGGGGGTCT TCGGGATAAC CTCCGTCGCC 
CTGCCGGGCG CCGCCGAGGC GGTGCAGCAG ATGGGCCTCA AGGGCGAGGT GGCCGTCACC 
GGCCTCTCGA CCCCCAACGA GATGAAGCCC TACGTGAAGT CCGGCGTGGT GGAGAAGTTC 
GTCCTCTGGA ACCCTGTGGA TTTGGGGTAC CTGGCGGTCT ACGTGGCGAA CGCCCAGGTC 
GAGGGCACCC TGCCCGAGTC CGGCACCTTC AAGGCCGGGC GGCTCGGCGA GGTGAAGATG 
CTCGCCCCCG ACGAGGTGCT CCTGGGGCCG CCGCTGGTCT TCACCAGGGA GAACATCGAC 
GAGTACGACT TCTGA
 
Protein sequence
MREGFGKRRV LRALLPLAAA ALLAACGVGQ QPQQGGEQGG GEGPNKICMM PKLVGIPYFN 
AAEKGAREAA RELGVDLVYD GPTEALAADQ VEFIEQFIQQ QCDAITVAAN DPDALAPAMK 
KAKQAGIATG AWDADVAEDA RDVFVNQATF QAIGYKLVDV MAEQTGGKGK FLVVTGSLTA 
PNQNAWLKEM RERMRQKYPQ MEIASVQPGE EDLQKGIDIT KDYLRANPDT AGVFGITSVA 
LPGAAEAVQQ MGLKGEVAVT GLSTPNEMKP YVKSGVVEKF VLWNPVDLGY LAVYVANAQV 
EGTLPESGTF KAGRLGEVKM LAPDEVLLGP PLVFTRENID EYDF