| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1621 |
|---|
| Symbol | |
|---|
| ID | 4116367 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 1645838 |
|---|
| End bp | 1648546 |
|---|
| Gene Length | 2709 bp |
|---|
| Protein Length | 902 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638036420 |
|---|
| Product | protein translocase subunit secA |
|---|
| Protein accession | YP_644394 |
|---|
| Protein GI | 108804457 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) |
|---|
| TIGRFAM ID | [TIGR00963] preprotein translocase, SecA subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.782819 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAACCTTC TGACGAAGAT ATTGCGCATG GGCGAGGGCC GGAAGCTCAA GGCCCTCCAG
CGGACGGTGG AGGAGGTCTC CGCCCGCGAG CCGGAGGTCC GGGGGCTTTC GGATGCGGCC
CTGCGCGCCA GGACGGACGA GTTCAAGGAG CGCCTGCAGG GGGGCGAGAC GCTCGACGAC
CTGCTTCCCG AGGCCTTCGC CGTGGTGCGG GAGGTCGCCC GGCGGACGCT CGGGCTCAGG
CCCTTCGACG TGCAGGTGAT GGGCGGCGTG GTGCTGCACC AGGGGAAGAT CGCCGAGATG
AAGACCGGCG AGGGCAAGAC CCTGGTGGCG ACCATGCCGG TCTACCTCAA CGCGCTGGCC
GGGCGGGGGG TGCACGTGGT CACCGTCAAC GACTACCTCG CTCGCCGCGA CGCGGAGTGG
ATGGGCCCCA TCTACGAGTT CCTCGGGCTC GAGGTGGGGG TCATCCAGGA GAGCATGGGC
TTCGAGGAGC GCAAGAAGGC CTACGCTGCG GACATCACCT ACGGCACCAA CGCCCAGTTC
GGCTTCGACT ACCTCAGGGA CAACATAGCC ACCTCGCCGG ACCAGCTCGT GCAGCGCGAG
CTCCACTACG CCATCGTGGA CGAGGTGGAC TCCATCCTCA TCGACGAGGC CCGCACCCCG
CTCATCATCT CCGGGCTTCC GGAGAGCGCG GCGGACCTCT ACTACCGCTT CGCCGCCATC
GTGCCCCGCC TCAGGGAGGG CGAGGACTAC GAGGTGGACG AGAAGAAGCG CCAGGTCGCC
CCGACCGAGC AGGGGGTGGC CAAGGTGGAG AAGGCGCTCG GCATCCCCAA CCTCTACGAC
GGGGTGAACA CCAACTTGGT CAACCACCTC ATCCAGGCCC TGCGGGCGCA CACCCTCTTC
CGGAGGGACC GGGAGTACAT CGTGCGCGAC GGCCAGGTCT TTATCGTGGA CGAGTTCACC
GGCCGGGTGC TGGAGGGGCG GCGGTACTCG GAGGGCCTCC ACCAGGCCAT CGAGGCCAAG
GAGGGGGTGG AGATAAAGGA GGAGAACCAG ACCGTCGCCA CGATCACCAT CCAGAACTAC
TTCCGGCAGT ACGAGAAGCT GGCGGGGATG ACGGGGACGG CGGCCACCGA GGCCGACGAG
TTCATGCACA CCTACAAGAT GGAGGTCGTC TCCATCCCGA CGCACCGGCC CATGATCCGC
GTCGACCGCG ACGACCTGGT CTACAGGACC AAGAAGGCCA AGTACGCGGC GGTGATCGAC
GACATCGTGG AGCGGCACAG AAAGGGCCAG CCGGTCCTGG TCGGCACCGT CTCGGTGGAG
GTCTCCGAGC ACCTCTCCGC GCTGCTCAAG CGGCGGGGGA TAAAGCACAA CGTGCTCAAC
GCCAAGCACC ACGAGCGGGA GGCGGAGATC ATCGCCGAGG CCGGCAAGAA GGGGGCGGTT
ACCATCGCCA CCAACATGGC CGGGCGCGGG ACGGACATCA AGCTCGGCGG CTCCGACGAG
TCCGGCGGCG GGGAGGAGTG GACCGAGGAG CACGAGCGGC TGGCCAGCGA GATCATGGAG
AAGTACCCCA CCATCACGCG GGACATGCTG GAGGGCCGCT CGCTGGAGTC GCTCGAGGTG
GTCAACCTGG GGGGGCTGTA CGTGCTGGGC ACCGAGCGGC ACGAGGCGCG CCGGATAGAC
AACCAGCTGC GGGGCCGCTC CGGGCGGCAG GGCGACCCCG GCGAGTCGAG GTTCTACCTC
TCCTTCGAGG ACGATCTGCT GCGGCTCTTC GGCGGGCAGA GGATGCAGAG CCTCATGGAG
CGCATCGGGC TGGAGGAGGA CGAGGCCATA GAGGCCGGGA TGGTCTCCAA CTCGGTCCGG
CGGGCCCAGG AGCAGGTCGA GAGCCGCAAC TTCCAGATGC GCAAGCGCAT CCTGGAGTAC
GACGACGTCC TCAACAAGCA GCGCGAGGTG ATCTACGCGA TCCGGCGCGA GATCCTGATG
GGCGAGAAGG TCGACACGAT GAGCTACGTG GAGGACGTGC TCACGGACGT GATCTCGCGC
TACGCCTCGG AGGACGTCTA CCCGGAGGAG TGGGACCTGG AGGGGCTCGC CACGGAGCTG
AACCGCTTCT ACCCCTGCCA GGTGGACTTC TCCTCCCTGG ACATCGAGAG CGCGACCGCC
GACCAGGTGA GGGAGATGGT CCTCGAGGAC GCCCGCGAGC GGCTGGAGGA GCGCCGGGCC
GAGTGGGAGG AGAGGACCGC CGAGCTCGAG CGCCGGGGGC TCGCCCGGGC GGACGGGCTG
GACTCCTTCG AGGAGGCCGA GCGCAGGACG CTGCTCTCGG TGGTGGACTC GCGCTGGAGG
GAGCACCTCT ACGAGATGGA GTACCTGCGC GAGGGGATCG GCTGGCGCGG GCTGGGCCAG
CGCGACCCGC TGGTGGAGTA CAAGCGCGAG GGCTACGACC TGTTCGTGGA GATGGAGCGG
GGCATCCGGG AGGACTACGT CACCTACATC TACCGGATAG AGAACCTCAA GCTCTCCGAG
ACGGACGTGG AGCGGCTCTC CTACAGCGGC GGGGGGGAGG AGCCGAACCA GCGCCCCAAG
AGCCCGCGCA GGAGAAGCGA GAGGAAGATC GGCCCGAACG AGCCGTGCCC GTGCGGCTCC
GGGAAGAAGT TCAAGAAGTG CCACGGAAGG GTGGGGGCCC CGCCGCTGCC CACCTCGCAG
TCGCAGTAG
|
|---|
| Protein sequence | MNLLTKILRM GEGRKLKALQ RTVEEVSARE PEVRGLSDAA LRARTDEFKE RLQGGETLDD
LLPEAFAVVR EVARRTLGLR PFDVQVMGGV VLHQGKIAEM KTGEGKTLVA TMPVYLNALA
GRGVHVVTVN DYLARRDAEW MGPIYEFLGL EVGVIQESMG FEERKKAYAA DITYGTNAQF
GFDYLRDNIA TSPDQLVQRE LHYAIVDEVD SILIDEARTP LIISGLPESA ADLYYRFAAI
VPRLREGEDY EVDEKKRQVA PTEQGVAKVE KALGIPNLYD GVNTNLVNHL IQALRAHTLF
RRDREYIVRD GQVFIVDEFT GRVLEGRRYS EGLHQAIEAK EGVEIKEENQ TVATITIQNY
FRQYEKLAGM TGTAATEADE FMHTYKMEVV SIPTHRPMIR VDRDDLVYRT KKAKYAAVID
DIVERHRKGQ PVLVGTVSVE VSEHLSALLK RRGIKHNVLN AKHHEREAEI IAEAGKKGAV
TIATNMAGRG TDIKLGGSDE SGGGEEWTEE HERLASEIME KYPTITRDML EGRSLESLEV
VNLGGLYVLG TERHEARRID NQLRGRSGRQ GDPGESRFYL SFEDDLLRLF GGQRMQSLME
RIGLEEDEAI EAGMVSNSVR RAQEQVESRN FQMRKRILEY DDVLNKQREV IYAIRREILM
GEKVDTMSYV EDVLTDVISR YASEDVYPEE WDLEGLATEL NRFYPCQVDF SSLDIESATA
DQVREMVLED ARERLEERRA EWEERTAELE RRGLARADGL DSFEEAERRT LLSVVDSRWR
EHLYEMEYLR EGIGWRGLGQ RDPLVEYKRE GYDLFVEMER GIREDYVTYI YRIENLKLSE
TDVERLSYSG GGEEPNQRPK SPRRRSERKI GPNEPCPCGS GKKFKKCHGR VGAPPLPTSQ
SQ
|
|---|
| |