Gene Rxyl_1603 details

Gene Information

• Locus tag: Rxyl_1603
• Symbol: smpB
• ID: 4116350
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rubrobacter xylanophilus DSM 9941
• Kingdom: Bacteria
• Replicon accession: NC_008148
• Strand: -
• Start bp: 1626824
• End bp: 1627276
• Gene Length: 453 bp
• Protein Length: 150 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 638036403
• Product: SsrA-binding protein
• Protein accession: YP_644377
• Protein GI: 108804440
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0691] tmRNA-binding protein
• TIGRFAM ID: [TIGR00086] SsrA-binding protein

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.0330195
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGCGACT TCGCGCGCAA CAGAAAGGCG CTGCACGACT TCGACATAGA GGAGACCTAC 
GAGGCGGGCA TCGCCCTCAC CGGCCCGGAG GTGAAGTCCG TCCGCGAGGG GCGGGCCAAC 
CTGCGGGAGA GCTACGTGCG GGTGAGAAAC GGCGAGGTCT TTCTCGTCGG GGCGCACATC 
TCGCCCTACA AGAACGCGAC CAACGTCCCC CAGGAGCCGA CCCGGGACCG CAAGCTCCTC 
CTGCACCGCA AGGAGATAGA CCGCCTCGCC GGGAAGAGCC AGGAGGAGAG GAAGACCATC 
ATCCCGCTGC GCCTCTACCC CAAGAACGGG CTCGTAAAGC TCGAGATAGC GGTCGCCAGC 
CGCAAGCGGC AGTACGACAA GCGGCGCGAG ATCGCCAAGA AGACCGCTCA GCGCGAGATA 
GAGCGCGCGA TGAAGGAGCG CCTCCGCCGT TGA 

 

Protein sequence

MSDFARNRKA LHDFDIEETY EAGIALTGPE VKSVREGRAN LRESYVRVRN GEVFLVGAHI 
SPYKNATNVP QEPTRDRKLL LHRKEIDRLA GKSQEERKTI IPLRLYPKNG LVKLEIAVAS 
RKRQYDKRRE IAKKTAQREI ERAMKERLRR