| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1542 |
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| Symbol | |
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| ID | 4116406 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rubrobacter xylanophilus DSM 9941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008148 |
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| Strand | - |
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| Start bp | 1560788 |
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| End bp | 1562416 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 638036338 |
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| Product | thiamine pyrophosphate enzyme-like TPP binding region |
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| Protein accession | YP_644316 |
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| Protein GI | 108804379 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGGACCA CGAGAGAGCA GGGCCGCGCG GGGGCGGGGC GTCGCCCGAC GGTGCGCGAG
GCCACCTTCG ACCTTCTGCG CGAGCTCGGG ATGACGACCG TCTTCGGCAA CCCCGGCTCC
ACGGAGCTTC CGTTTCTCTC GGGCTTTCCG GAGGACTTCT CCTACGTGCT CGGGCTGCAC
GAGGGGGCGG TGGTCGGGAT AGCCGACGGC TACGCCCAGG GGCGGGGGCG TCCGGCGCTG
GTCAACCTGC ACACCGCTTC GGGGCTGGGC AACGCCTCGG CGGCGATCAT GACGGCGTAC
CTCAACCGCA CGCCGCTGGT CATCGTGGCC GGGCAGCAGG ACCGGCGCCA CCTCGCCGCG
GAGCCGTTTC TCGCGGGGAG GCTCACCGAG ATGGCGCAGC CCTACGTGAA GTGGAGCAGC
CAGCCGGTGC GGGCGGAGGA CGTGCCGGCT GCCATCGCGC GGGCCTACCA CCTCGCGGCC
CAGCCGCCGG CGGGCCCGGC CTTCGTCGCC GTCCCGCAGG ACGACTGGGA GGCCGTTGCG
GGGGAGGTGC CGCGGCACAG GGTGGTGCAC AGGGCCCGGC CGGACGAGCG CGAGCTGGAG
CGGGCGGCGC GGGCGCTGGA GGCCGCCCGC TCGCCGGCCA TCGTCGCGGG GGCCGGGGTG
GACCGCTCGG GCGCCTGGGA GGACACGGTG AGGCTTGCCG AGAAGCTAAG GGCGGCGGCG
TGGGCCGATC CCTTCGCCTC CCGGGCGGGT TTCCCGCAGG ACCACCCGCT GTTCCGGGGC
CACCTGAGCC CGGCCCAGGC CGCGCTCGCG GAGGAGCTCT CCGGGCACGA CGTGGTGCTG
GTGCTCGGCG CCCCGGTCTT CAGGTACTAC CGCTACCTGC CGGGGCCGGT GGTGGCCGAG
GGGACGGAGC TCTTGCACGT GACCGACGAC CCGGAGGAGG CCGCGCGGGC CCCCGTGGGG
GTGAGCCTGG TGGGGGACGT GGCCCTCGCG GTGCGGCACC TGCTCGGGAG CGTTCGCCCC
TCCGGGCGCC CGGCGCCGCA GCCCCCGCCG GCCCCGCCCG CACCCCGGGC GGCCGAGCCG
CTGCCCGTGG ACTACGCGCT CTACGCCGTC GGGCGGGCGC TCCCCGAGGA GGCCGTGGTG
GTCGAGGAGA CCCCCTCCAG CAAGCCCCTG CTGCACCGGT ACATCAGGGT CAGGAGGCCC
GGCGGGTTCT ACAGCGCGGC GAGTGGGGGG CTCGGGTTCG GCGTCTCGGC CGCCGTCGGC
CTCAGCATCG CCGACCCGGA GCGGCCGGTG GTGTGCGTGG TGGGCGACGG CTCGCTCGCC
TACGGGTTGC AGGCGCTGTG GAGCGCCGGG CGCTACGCGC GGAGGGTCGT CTTCGTCGTG
CTCAACAACC GCCAGTACCG GGTGCTCCGG CTGCTGGCCC GGCGCGACGG GCTGGGGGGC
GGGCTCCCGG GGACCGGCCT GGAGGGGCTC GACCCGGAGG GGGCGGCCCG CAGCCTCGGG
TGCCCGGCCG AGACGGTGCG GGGAGCAGGG GAGCTGGAGG AGGCCCTCGG GCGCGCGCTG
GCCTCCGGAG GCCCCCGCCT GCTCAACGTG CTCGTCGACC CGGAGAGCCC GCGGGACATG
TGGGGATAG
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| Protein sequence | MRTTREQGRA GAGRRPTVRE ATFDLLRELG MTTVFGNPGS TELPFLSGFP EDFSYVLGLH
EGAVVGIADG YAQGRGRPAL VNLHTASGLG NASAAIMTAY LNRTPLVIVA GQQDRRHLAA
EPFLAGRLTE MAQPYVKWSS QPVRAEDVPA AIARAYHLAA QPPAGPAFVA VPQDDWEAVA
GEVPRHRVVH RARPDERELE RAARALEAAR SPAIVAGAGV DRSGAWEDTV RLAEKLRAAA
WADPFASRAG FPQDHPLFRG HLSPAQAALA EELSGHDVVL VLGAPVFRYY RYLPGPVVAE
GTELLHVTDD PEEAARAPVG VSLVGDVALA VRHLLGSVRP SGRPAPQPPP APPAPRAAEP
LPVDYALYAV GRALPEEAVV VEETPSSKPL LHRYIRVRRP GGFYSAASGG LGFGVSAAVG
LSIADPERPV VCVVGDGSLA YGLQALWSAG RYARRVVFVV LNNRQYRVLR LLARRDGLGG
GLPGTGLEGL DPEGAARSLG CPAETVRGAG ELEEALGRAL ASGGPRLLNV LVDPESPRDM
WG
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