Gene Rxyl_1463 details

Gene Information

• Locus tag: Rxyl_1463
• ID: 4116812
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rubrobacter xylanophilus DSM 9941
• Kingdom: Bacteria
• Replicon accession: NC_008148
• Strand: -
• Start bp: 1483148
• End bp: 1483768
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 638036255
• Product: Tfp pilus assembly protein PilO-like protein
• Protein accession: YP_644237
• Protein GI: 108804300
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3167] Tfp pilus assembly protein PilO

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.00646714
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGACGGCG AGCGCAGGAC GCTCGTCTTC GGGGCGCTCG GCATCCTGGC CGCGGTGGCG 
CTGGCCTACC TGCTCCTCTT GAGCCCGCTG CTGGACAGGC TGCAGTCCAG CGCGCAGGAG 
CGGGACCAGA AGGAGGCCCG GCTCGCCGGC CTCCGGGAGG AGGTGCGGAG GCTCGAGGAC 
GTCCGGCGCA ACGCCCCGGA GCTCGAGCGC CAGCTGCTGG AGCTCTCGCG GCGGATCCCG 
GAGCGGCCCG AGATCCCCAC CTTCATCGTC CAGGTGGAGG AGGTGGCGCG GGCCTCCGGG 
GTGACCCAGC TCTCCATAGA GCCCGGCACC CCCGGCGCCC CGGAGACCGG TGGCCCCTAC 
TCGGTCGTCC CGGTTACAAT GACCTTCGAG GGAACCTACG AGGAGATGCA GGACTTCCTG 
CTCCGGCTGC AGAACCTGGT GCGGCTGGTC GCGGTGAACG AGGTCTCCTA CGAGCCCGCG 
GAGGCCGCCG GCGCGGCCGC GGGCATCGAG CGCCTTCTGA GGGTGGAGGT GCGGGCGGAG 
ATATACTTCC AGCCGGAGGG CCCTGCCGGA GCAGGGGCCG GAGAGACGAC GACGGGGGAG 
GTGACCTCCG GTGGCGGGTA G 

 

Protein sequence

MDGERRTLVF GALGILAAVA LAYLLLLSPL LDRLQSSAQE RDQKEARLAG LREEVRRLED 
VRRNAPELER QLLELSRRIP ERPEIPTFIV QVEEVARASG VTQLSIEPGT PGAPETGGPY 
SVVPVTMTFE GTYEEMQDFL LRLQNLVRLV AVNEVSYEPA EAAGAAAGIE RLLRVEVRAE 
IYFQPEGPAG AGAGETTTGE VTSGGG