| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1418 |
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| Symbol | |
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| ID | 4117274 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rubrobacter xylanophilus DSM 9941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008148 |
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| Strand | + |
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| Start bp | 1438068 |
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| End bp | 1440128 |
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| Gene Length | 2061 bp |
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| Protein Length | 686 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 638036210 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_644192 |
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| Protein GI | 108804255 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00293848 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGACTAG AGATTCCCGT TGGTGAGCGC GCCATCGTGC TCGAAACCGG GAAGCTGGCC
CGGCAGGCCG GCGGGGCGGT GACGGCGAGG TTCGGCGACA CCACGGTGCT CTCCACGGCC
ACCCGCTCCG AGGAGCCGCG CCCGGGGGCC ACCTTCCTGC CGCTCAGCGT GGACATCGAG
GAGCGGATGT CCTCGGCGGG CAAGATCCCG GGCGGGTTCT TGAAGCGGGA GGGCAAGCCC
TCCGAGAAGG CCATCCTCAC CGCACGCCTC ACCGACCGCC CGATAAGGCC GCTGTTCCCG
AAGGACTACT ACTACGAGGT ACAGGTCATC GGGACCGTGC TGGTCGCCGA CCAGGAGAAC
CCCTACGACG TGGTCAGCAT GGTGGGGGCC TCGGCGGCGC TGGCGCTCTC GGACATCCCC
TTTGGCGGCC CCATAGGCGC CGTGCGGGTG GGGCGCCACC CCGACGGGGG CTTCATCCTC
AACCCCACCT ACCAGCAGCT CGAGGAGAGC GACCTCGACA TAGTGGTGGC CGGCACCAAG
GAGGCCATCA CCATGGTCGA GGCCGGGGCC CGGGAGGTCA CCGAGGACGT GGTGGTCGAG
GCGCTCGAGG TGGCCCAGGG GGTCATCCGC GAGCAGGCCG AGGCCATCGA GCGGTGGGCG
GCCGAGCACG GCGAGGAGAA GCAGCCCTTC GAGGAGCCCG GCGAGAACCC GTTCGTCGAG
GAGCTGCGGG GGGCCTATCT GGAGAGGATA AAGGAGGGCC TCATCAGCAC CGACCGGCGG
GCGCGCCACG AGGCCATAGA CCTCCTCAAG GAGGAGCTCG TCGAGGGGCG CTCCGAGGAG
GAGGTGCCGC TCGTCCTCGA CGCCCTCGCC CAGCTGCAGA AGGAGGCCTT CCGCAAGCTC
TACCTCGAGG ACCGCAAGCG CACCGATCTG CGGGCGTTCG ACGAGATCCG GCCGACCACC
GCCGAGGCGC ACGTGCTGCC GCGGGTGCAC GGCACCGGGC TGTTCACCCG CGGGGAGACG
CAGGTGCTCT CCTCGCTGGC GCTCGCCGAC CTCGGGCTCG TGCAGCGGCT CGACACCCTG
GAGCCGCAGA CCACCAAGCG CTACATGCAC CACTACTACT TCCCGCCGTA CTCCACTGGG
GAGACCGGGC GGCTCGGGCC GCCGCGGCGG CGCGAGATCG GGCACGGGGC CCTGGCCGAG
CGGGCGCTGC TGCCGGTGAT CCCCTCCGAG GAGGAGTTCC CGTACGCCAT AAGGATCATC
TCCGAGGTGC TGGAGTCCAA CGGCTCCTCC TCCATGGCCA GCGTGTGCGG CTCGACGCTC
GCGCTCATGG ACGGCGGGGT GCCCATAAAG GCGCCGGTGG CGGGGGTGGC GATGGGGCTC
GTCAAGGAGG GCGACGACTA CGTCATCCTC ACCGACATCC AGGGGCTCGA GGACCACATG
GGAGACATGG ACTTCAAGGT CGCCGGGACC CGGGACGGGA TCACGGCGCT GCAGATGGAC
ATGAAGATCA CGGGGGTCTC CGCCGAGCTC CTGAAGGAGG CGCTCGAGCA GGCGCGCAGG
GGGCGGCTGC AGATCCTGGA CATCATGCGG GAGGAGATAG CCGAGCCCAG GCCGGAGATC
TCCGACCACG CCCCGCGGGT GGAGGTCATC CAGATCCCCA CGGACAAGAT CGGGCTGCTC
ATCGGGCCCG GCGGCAAGAC CATAAACGCC CTGCAGGACG AGTACGGGGT GAACATCTCC
GTGGAGAACG ACGGCACGGT GTACGTCGCC GGGGTGGAGG GGATGTCGGT GAAGGCCGCC
GTCTCCGCGA TAAAGGGGAT GACCAAGGAG GTGGAGGCGG GGGACATCTA CGTCGGCAAG
GTGGTGAAGA CCACCAACTT CGGGGCCTTC GTCGAGCTCA CCCCGGGCCG GGACGGGCTG
CTGCACATCT CGCGCCTGGC GCCCGGCAAG CAGCGCGTCC GGCGGGTGGA GGACGTGCTC
AACGAGGGCG ACGTGGTCAA GGTGCGGGTG CTGGAGATAG ACAAGCAGAA CCGCATCTCG
CTGGAGATGG TGGAGGACTA G
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| Protein sequence | MRLEIPVGER AIVLETGKLA RQAGGAVTAR FGDTTVLSTA TRSEEPRPGA TFLPLSVDIE
ERMSSAGKIP GGFLKREGKP SEKAILTARL TDRPIRPLFP KDYYYEVQVI GTVLVADQEN
PYDVVSMVGA SAALALSDIP FGGPIGAVRV GRHPDGGFIL NPTYQQLEES DLDIVVAGTK
EAITMVEAGA REVTEDVVVE ALEVAQGVIR EQAEAIERWA AEHGEEKQPF EEPGENPFVE
ELRGAYLERI KEGLISTDRR ARHEAIDLLK EELVEGRSEE EVPLVLDALA QLQKEAFRKL
YLEDRKRTDL RAFDEIRPTT AEAHVLPRVH GTGLFTRGET QVLSSLALAD LGLVQRLDTL
EPQTTKRYMH HYYFPPYSTG ETGRLGPPRR REIGHGALAE RALLPVIPSE EEFPYAIRII
SEVLESNGSS SMASVCGSTL ALMDGGVPIK APVAGVAMGL VKEGDDYVIL TDIQGLEDHM
GDMDFKVAGT RDGITALQMD MKITGVSAEL LKEALEQARR GRLQILDIMR EEIAEPRPEI
SDHAPRVEVI QIPTDKIGLL IGPGGKTINA LQDEYGVNIS VENDGTVYVA GVEGMSVKAA
VSAIKGMTKE VEAGDIYVGK VVKTTNFGAF VELTPGRDGL LHISRLAPGK QRVRRVEDVL
NEGDVVKVRV LEIDKQNRIS LEMVED
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