| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1362 |
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| Symbol | |
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| ID | 4117181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rubrobacter xylanophilus DSM 9941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008148 |
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| Strand | + |
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| Start bp | 1389958 |
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| End bp | 1390812 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 638036155 |
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| Product | shikimate dehydrogenase |
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| Protein accession | YP_644137 |
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| Protein GI | 108804200 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.758988 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCCGTCC CGCGCATAGA CGGCGAAACC TCCCTGGTGG GGCTCATCGG CCACCCGGTC
TCCCACAGCC TGAGCCCGCA GATGCACAAC GCCTCCTTCG CCGCGCTGGG GCTGAACTAC
GTCTACGTGC CGCTCGACGT GCCGCCGGAG GAGCTCGAGG CCGGGGTGAG GGGGCTCAGG
GCCCTGGGCT TCCGCGGCTT CAACGTGACC ATGCCCCACA AGGAGCGGGT GTGCGCCCTC
GTGGACCGGC TGGACGAGGC CGCCCGCATC TCCGGGGCGG TCAACACGGT GGCGGTGGAG
GAGGACGGTT CCCTGCTCGG GATGAACACC GACGGGAGCG GTTTCTTGCT GGCCTGCCGC
GAGGCCGGGG TCGAGCCCTC CGGCAGGGTC GCCCTCGTGG CGGGGGCGGG CGGGGCGGCC
GCCGCGGTGG CGGTGGCGCT GCTGAGGGCG GGGCTCTCGG AGCTGCGGAT CGCCAACCGG
ACCCCGGGGC GGGCCCTCGG GCTGCGCGAG CGGCTCGGGG GGCTCGGCGG CCGGGTGGAG
GTCTTCCCCC TCTCCGGGCT GGCGGAGGCC GCCGGGGGGG CGGACATCCT GGTGAACGCC
ACCTACCTGG GCATGCGCGC CGGCGACCCG CTCCCCTTCC CCGAGGAGCT GCTGCGCCCC
GGCGTGGCCG TCTGCGACGC CGTCTACCGG CCGGGGAAGA GCACGGCGCT CGTGCGGGCC
GCCCGGCGGC GGGGGCTCGC CGCGGTCCCC GGGGAGCTTA TGCTCCTCTA CCAGGGCGTC
GAGGCCCAGC GGGCCTGGAC CGGGGTGGAC CCCGACGTGG GGGCGATGCG CCGGGCGCTC
TCCGGGGAGG GGTAG
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| Protein sequence | MSVPRIDGET SLVGLIGHPV SHSLSPQMHN ASFAALGLNY VYVPLDVPPE ELEAGVRGLR
ALGFRGFNVT MPHKERVCAL VDRLDEAARI SGAVNTVAVE EDGSLLGMNT DGSGFLLACR
EAGVEPSGRV ALVAGAGGAA AAVAVALLRA GLSELRIANR TPGRALGLRE RLGGLGGRVE
VFPLSGLAEA AGGADILVNA TYLGMRAGDP LPFPEELLRP GVAVCDAVYR PGKSTALVRA
ARRRGLAAVP GELMLLYQGV EAQRAWTGVD PDVGAMRRAL SGEG
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