Gene Rxyl_1347 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRxyl_1347 
Symbol 
ID4117166 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRubrobacter xylanophilus DSM 9941 
KingdomBacteria 
Replicon accessionNC_008148 
Strand- 
Start bp1374558 
End bp1375148 
Gene Length591 bp 
Protein Length196 aa 
Translation table11 
GC content79% 
IMG OID638036140 
Productpolysaccharide deacetylase 
Protein accessionYP_644122 
Protein GI108804185 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0921833 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCCCTGA CCTTCGACGA CGGGCCGGAC CCCCTGTGGA CCCCGCGGGT GCTCGAGGCC 
CTCGACGCCG CCGGCGCGCG GGCCACCTTC TTCGTGATCG TCCCGCGCGC CCGGAGGGCG 
GCGGGGCTCC TCCGCGAGAT GCTCGCGCGG GGCCACGAGG TGGCGCTGCA CTGCACGGAG 
CACGTCCGGC ACACCGAGAC CTCGCGCGAG CGGGTGGTGC GGGACACGGC GGAGGGGCTC 
GCCGGCCTGC GGGACCTCGG CGTGGAGCCC GCCCTGTGGC GGCCGCCGTG GGGGGCGCTC 
GCCCCCTGGA CGCGGGAGGT GGCGGAGGGC TTCGGGCTCG CGCTGTGCCT GTGGAGCGCG 
GACACCCACG ACTGGCGGGG CGACCCCGCG CGGCGGATGC TCCTCGAGGT GGCCCCCGCC 
CTGCGGCCCG GGGCGGTGGT GCTCATGCAC GACGGCCTCG GTCCGGGGGC CCGGAGGAGC 
GGCTGCCGGC AGACCGTGGA GCTCGTCGCC CCGCTGGTCG CCAGGATCCG GGCGGCCGGC 
TGCGAGCCGG CCCCCGCCGG GGAGATCGCC GCCAAGGGGC GGTTGCGTTG A
 
Protein sequence
MALTFDDGPD PLWTPRVLEA LDAAGARATF FVIVPRARRA AGLLREMLAR GHEVALHCTE 
HVRHTETSRE RVVRDTAEGL AGLRDLGVEP ALWRPPWGAL APWTREVAEG FGLALCLWSA 
DTHDWRGDPA RRMLLEVAPA LRPGAVVLMH DGLGPGARRS GCRQTVELVA PLVARIRAAG 
CEPAPAGEIA AKGRLR