Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rxyl_1334 |
Symbol | |
ID | 4116021 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rubrobacter xylanophilus DSM 9941 |
Kingdom | Bacteria |
Replicon accession | NC_008148 |
Strand | + |
Start bp | 1360043 |
End bp | 1361506 |
Gene Length | 1464 bp |
Protein Length | 487 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 638036128 |
Product | protein-export membrane protein SecD |
Protein accession | YP_644110 |
Protein GI | 108804173 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.763605 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACAACA CGCGCAACAA CCTCATCATC CTCGGGCTGG TGCTGGTCCT CATCGCCGTC TCGGCCTACC TCATCTTCAT CCGTCAGCCC GTTGCGCGGG CCACCCAGCT CGGGCTCGAC CTCAAGGGCG GGGTCCGGGT GCAGCTTGAG GGCTACCAGC ACGGCGGCAG CGAGGTGACC CGGGAGGAGA TGCAGCGGGC GGTGGAGATC ATCCGCCAGC GGGTGGACAG CCTGGGGGTG ACCGAGCCGG AGATCCGGCT GCAGGGCCAG AACCAGGTGC TCGTGGACCT GCCGGGCATC TCCGACCGCG ACCGGGCCGT GGAGGTCATC GGGCGCACGG CGCAGCTCGG CTTCTACGAG GTTCTGGCCT TTGAGGAGCG GGCGGGGGTG CCCGAGGGGC GGGTGGACGA GGCGAAGCGG GACATCCGGG AGAGCCTGCG GCAGGACGAC GCCTACAGGG AGGGGAAGAC CAAGATCCTC TTCGAGGAGA GCCCCAACCC GGGCGGGGAG GGGCTCTACG TGGCCGGGTA CGTGGTCCGC GAGCGGCCGG ACATGACCGG AGACGCGGTG GAGAGCGCCA ACCTGGGGCG CGACCCGGCG GGGAGGCTGC AGGTCGAGAT AAACCTCACC GGCAGGGGGG GCGACCAGTT CTTCGACCTC ACCCGCCAGA TAGTGGACAA CGCCCTGGAG CGGGGCGAGC CCGGGACCGG ACGGCTCGCC ATCGTGCTTG ACCAGGACGT CGTGAGCGCC CCGGTGGTGG ACGAGCCCAT ACCCGGCGGG CAGGTCGTGA TCCAGAACAC CAGCTCGCCC ACCGGGCTCC CCGAGCAGGA GGCGCGGGAG CTCGAGATCG TGCTGCAGAC CGGCGCGCTC CCGGTGAACA TGCGGGTGCT CTCGGTGGAG ACCATCGGCC CCACCCTGGG GACCGAGTCC CTGCGGAGCG GGCTCATCGC CGCGCTCGTC GGCTTCGGGC TCGTGCTGCT CTTCCTCGTC GCCATCTACC GGGCGCTCGG GGTGGTCGCC GGGCTCGCGC TGCTCATCTA CGCCTTTCTG CTGTGGGGGC TGATCGTGGC CATCCCCGTG ACGGTGACCC TCCCCGGTAT TGCGGGCATC GTGCTCTCCG TGGGGGTCGC GGCCGACGCG AACATCGTGA TCTTCGAGCG GATAAAGGAA GAGGTGCGGC GGGGCAAGAC GCCGCGCACG GCGATCCAGG TCGGCTACCA GAAGGGCTTC CGGGCGATCC TGGACGGCAA CATCACCACG CTCATCACGG CTTTCATCCT GTTCGCGATG GCCAGCGCGC AGGTGCGGGG CTTTGCGGTG CTGCTGGCGA TCGGCGTGGT GCTCTCCATG TTCACGGCGG TGGTGGTCAC CCGGGCGCTG CTGGGGCTGC TCTCCAGCCG CGGCATCCAC CTCTCGCCGG CGATGATGGG GGTTTCGAAG AAGAGCCTCG CGGGGGCGCG GTAG
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Protein sequence | MNNTRNNLII LGLVLVLIAV SAYLIFIRQP VARATQLGLD LKGGVRVQLE GYQHGGSEVT REEMQRAVEI IRQRVDSLGV TEPEIRLQGQ NQVLVDLPGI SDRDRAVEVI GRTAQLGFYE VLAFEERAGV PEGRVDEAKR DIRESLRQDD AYREGKTKIL FEESPNPGGE GLYVAGYVVR ERPDMTGDAV ESANLGRDPA GRLQVEINLT GRGGDQFFDL TRQIVDNALE RGEPGTGRLA IVLDQDVVSA PVVDEPIPGG QVVIQNTSSP TGLPEQEARE LEIVLQTGAL PVNMRVLSVE TIGPTLGTES LRSGLIAALV GFGLVLLFLV AIYRALGVVA GLALLIYAFL LWGLIVAIPV TVTLPGIAGI VLSVGVAADA NIVIFERIKE EVRRGKTPRT AIQVGYQKGF RAILDGNITT LITAFILFAM ASAQVRGFAV LLAIGVVLSM FTAVVVTRAL LGLLSSRGIH LSPAMMGVSK KSLAGAR
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