| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1165 |
|---|
| Symbol | |
|---|
| ID | 4116849 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 1190865 |
|---|
| End bp | 1191968 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 638035955 |
|---|
| Product | pilus retraction ATPase PilT |
|---|
| Protein accession | YP_643943 |
|---|
| Protein GI | 108804006 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.591926 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGCA TGGTGGCGGA GAACGGGCTC GGGGACTTCC TGCTTGAGAT GCTCGAGGCC
GGGGCCAGCG ACCTGCACCT CACGGCGGGC AGCCCGCCGG CGGTGCGCGT GGACGGCGAG
GTGCGGCCTC TGGACCACCC GCCGCTCACC CCGGTGGCCA CCCGCGACCT CGTCTACGAC
ATCCTCACCG ACGAGCAGCG GCGGCGGCTG GAGAACGACT GGGAGCTGGA CTTCTCCTAC
TCCGTCCCCG GCGCGGCCCG CTTCCGGGTC AACGTCTACT TCCAGCGGGG CTCGCTCGGG
GCCGCCTTCC GGGCCATCCC CCACGAGATA AAGGGCCTCG GCGAGCTGGG GCTCCCCGAG
GCCGTGGAGG GGCTCACCGA GAAGCCGCGC GGGCTCGTGC TCGTCACCGG GCCCACCGGC
AGCGGCAAGT CCACCACGCT CGCCGCCATG ATCGACCGCA TCAACGAGAC CCGCAGCGGC
CACATCATGA GCATCGAGGA CCCCATAGAG TTCCTGCACC GGCACAAGCG CTGCATCGTC
AACCAGCGGG AGGTCTCCTC CGACACCCGC AGCTTCGCCG CGGCGCTCCG GCACGTGCTG
CGGCAGGACC CGGACGTGAT CCTGGTGGGG GAGATGCGGG ACCTCGAGAC CATCTCGCTC
GCCGTCACCG CCGCGGAGAC CGGCCACCTG GTCTTCGGGA CGCTCCACAC CCAGGACGCC
CCGCAGACCG TGGACCGCAT CGTGGACGTC TTCCCGCCCC ACCAGCAGGC CCAGGTGCGC
GCGCAGCTGG CCAACGCGCT GCAGGGCATC GTCACCCAGA CGCTCCTCAG GCGGCGCGAC
GGCCGCGGGC GGGTGGTGGC CTGCGAGGTG CTCGTGGCCA CCCCGGGGGT GCGCAACCTC
ATCCGGGAGG GGAAGAACCA CCAGCTCTAC TCCGCGATGC AGACCGGCGG CAAGTTCGGG
ATGCAGACGC TCGACGCCGC GCTCGCGGGC CTCGTCCGCC GGGGCGTGGT CTCCCCCGAG
GAGGCCGGGC GGCACGCCTC GAACCCCGAC GAGCTGCGGC GGCTCGCCGG GGCCTACGCG
GGCGGCGCGC GGGGGGTCTT CTAG
|
|---|
| Protein sequence | MSGMVAENGL GDFLLEMLEA GASDLHLTAG SPPAVRVDGE VRPLDHPPLT PVATRDLVYD
ILTDEQRRRL ENDWELDFSY SVPGAARFRV NVYFQRGSLG AAFRAIPHEI KGLGELGLPE
AVEGLTEKPR GLVLVTGPTG SGKSTTLAAM IDRINETRSG HIMSIEDPIE FLHRHKRCIV
NQREVSSDTR SFAAALRHVL RQDPDVILVG EMRDLETISL AVTAAETGHL VFGTLHTQDA
PQTVDRIVDV FPPHQQAQVR AQLANALQGI VTQTLLRRRD GRGRVVACEV LVATPGVRNL
IREGKNHQLY SAMQTGGKFG MQTLDAALAG LVRRGVVSPE EAGRHASNPD ELRRLAGAYA
GGARGVF
|
|---|
| |