| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1156 |
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| Symbol | |
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| ID | 4116840 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rubrobacter xylanophilus DSM 9941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008148 |
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| Strand | - |
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| Start bp | 1182570 |
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| End bp | 1184591 |
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| Gene Length | 2022 bp |
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| Protein Length | 673 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 638035946 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_643934 |
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| Protein GI | 108803997 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGCGGG CAGGAGGAAA CGGGGAGCGT AGAACGGGAT CTTCCGCGGA GGCACCCGGC
GGCAGGGTCG TGCCCGGCTG GGTGGTCCTC GGCGCCGCCG CGCTGCTGCT CGTAGCCGGG
GTCATGGCCG GCTCCGGGCT GCGCGAGCAC GCCCGCCAGG ACCGCCAGGC CCTCCTGCTG
CTCAAGGAGG TAGAGTCCAG CTCCTACCTG CTGCGCTCCC TGAGCTGGGA GGCCGCCGCC
GAGGGGGGCG GCTCCCCCGC CCTCGCCGCC CGGGAGCGGG AGGCCCGCGC GCGGGCCCTG
AGCGCCATCG AGAGCCTGCG CGCGCTCGAC GCCACCCAGG TCGGCGAGCG CCAGAGCGCC
CGCCGCGTGG AGCGGGCGTT CCGGAGCTAC GCCTCCGCCC TAAAGGGCGG CCCCGGCGAC
GGGGCGGGGG AGGCCTTCCT GCGGCTGCGC TCGGCCCTCG AGGAGGCCGA GCAAACCTAC
GCCGCCGACG CCCGGCGCAC GACCCGCATA GCCGACGCCG GCAGCGTGCT CGGCCTCCTC
GTGGCGGCAG CGGCCGCCGG GCTTCTGTAC ATGCGCTACC TGCGGGTGCG CGAGGCGGCC
GCCGCAGCGG AGGCCGAGCG CCGGGCGCTG CGCCGGAGCG AGGAGCTCTT CCGCCACCAG
GCGCTCCACG ACCACCTCAC CGGCCTGCCC AACCGCGCCC TCTTCCGGGA GCGGCTCGGG
GAGATACTCT CCAGGTCCGG AGAAGCCGCG GTGCTCTTCG TGGACCTGGA CAACTTCAAG
GTGGTCAACG ACTCGCTGGG CCACGAGGTG GGCGACCGGC TGCTGGTCGA GGTGAGCCGG
CGCCTCAAGG GGTGCCTGCG CGCCACCGAC ATGGCCGCGC GGCTGGGCGG CGACGAGTTC
ACCGTCCTGC TGGACGGCGC CGGCGTCCGC TGCCCGGAGG AGGTGGCGCG CAGGCTGCTG
CGGGAGCTGG GGGAGCCCTT CGAGGTCGAG GGGCACACCC TCTTCGTGGA GGCCAGCGTG
GGCATAGCAA CAGGCGCCGC CGGCCTGGGG CGCCCCGATG ACCTGCTGCG GGCCGCCGAC
GTGGCCCTCT ACCGGGCCAA GGCCGAAGGG AAGGGCCGCT ACCACGTCTT CGACCGGAGG
CGGGACGCCC CCGAGCTGGA GCGGCTGCGG CTGGAGAACG AGCTGCGGGA GGCGGTCCGC
AGCGGGCAGC TCGAGCTCTA CTACCAGCCG GTCTACTCGC TGGAGCTCGG CAGGATCGCC
GGGATGGAGG CCCTCCTGCG GTGGAACCAC CCCCGGCGCG GGACCATGCT CCCCGGCGAG
TTCGTCCCCA TGGCCGAGGA GACCGGGCTC ATCGTCCCCG TGGGCAGGTG GGTGCTCGAG
GAGGCCTGCC GGCAGGCCCG CGCCTGGGAG CTGGGCCTCC CGGAGGGCGC CTCGCCCATG
GTCGGGGTCA ACCTCTCGCT GCGCCAGTTC CAGAACCCCG GCCTCGTGGA GCACGTCGCC
CGGCTGCTGC GGGAGACCGG GCTCGACCCC GCCCTCCTGA CCCTGGAGAT CACCGAGAGC
GTCGCCATGC ACGACGTGGA CTCCACCGTG CGCACCCTGG AGCGGCTCAA CGCCATGGGC
GTCTGGCTCG TCATAGACGA CTTCGGGACG GGCAACAGCT CCATCGCCTA CGTGGGCAGC
CGCTTCAAGA TGAACCACCT CAAGCTGGAC GGGGCCTTCG TGCGCGAGTT TCTGGACGAC
CCGGAGAACC CCACGATCCT CCCCGGCCTC ATAGACTTCG CCCACGCCGT GGGGCTCCGG
GTGATCGCCG AGGGGGTGGA GACGCGCGGG CAGCTCGAGC GCCTGCGGGA GCTGGGCTGC
GAGTTCGTGC AGGGCTACTA CGTCGCGCCG CCGCTCGGCG CCGCGGAGGC CACCGACCTG
CTCACGGGGA GAAAGCCCCT CTTCCGGGGG GACCCGCCAC CGGGAAAAGA CACGCCTGAG
AGACAGAGGA TGAAGGATGC ACAGGATAGA GCTTACCGCT GA
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| Protein sequence | MARAGGNGER RTGSSAEAPG GRVVPGWVVL GAAALLLVAG VMAGSGLREH ARQDRQALLL
LKEVESSSYL LRSLSWEAAA EGGGSPALAA REREARARAL SAIESLRALD ATQVGERQSA
RRVERAFRSY ASALKGGPGD GAGEAFLRLR SALEEAEQTY AADARRTTRI ADAGSVLGLL
VAAAAAGLLY MRYLRVREAA AAAEAERRAL RRSEELFRHQ ALHDHLTGLP NRALFRERLG
EILSRSGEAA VLFVDLDNFK VVNDSLGHEV GDRLLVEVSR RLKGCLRATD MAARLGGDEF
TVLLDGAGVR CPEEVARRLL RELGEPFEVE GHTLFVEASV GIATGAAGLG RPDDLLRAAD
VALYRAKAEG KGRYHVFDRR RDAPELERLR LENELREAVR SGQLELYYQP VYSLELGRIA
GMEALLRWNH PRRGTMLPGE FVPMAEETGL IVPVGRWVLE EACRQARAWE LGLPEGASPM
VGVNLSLRQF QNPGLVEHVA RLLRETGLDP ALLTLEITES VAMHDVDSTV RTLERLNAMG
VWLVIDDFGT GNSSIAYVGS RFKMNHLKLD GAFVREFLDD PENPTILPGL IDFAHAVGLR
VIAEGVETRG QLERLRELGC EFVQGYYVAP PLGAAEATDL LTGRKPLFRG DPPPGKDTPE
RQRMKDAQDR AYR
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