Gene Rxyl_1152 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRxyl_1152 
Symbol 
ID4116836 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRubrobacter xylanophilus DSM 9941 
KingdomBacteria 
Replicon accessionNC_008148 
Strand- 
Start bp1179080 
End bp1179985 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content74% 
IMG OID638035942 
Producthistone deacetylase superfamily protein 
Protein accessionYP_643930 
Protein GI108803993 
COG category[B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0905584 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGGGTAT TCTACAGCGA CAGCTACGTG ATACCCCTCC CGGAGGGGCA CCGCTTCCCC 
ATGCGCAAGT ACGCCATGCT GCGCGAGCGG GTGGCCGCCG GCCGGGCCTC CGGCGGGCTG 
CGGGAGCCCC GCCGGGCGAA GGACGAAGAT CTTTTGCGCG CCCACAGCCC CTCCTACCTG 
CGGCGGGTGG TCTCGGGCTC GCTGGGCAAA CAGGAGCTCC GGCGCCTGGG CTTCCCCTGG 
TCGGAGCGGC TCGTGGAGCG CTCGCGGAGG GCCGCGGGCG GGACCATCGA CGCCTGCCTG 
GCCGCGCTGG AGGAGGGGAT CGCCGCCAAC CTGGCGGGCG GCACCCACCA CGCCTTCGCC 
GACCGGGGCG AGGGCTTCTG CGTCTTCAAC GACGCGGCGG TCGCGATACG GGCGGTGCAG 
GCGGCGGGCC TGGTGGAGCG AGCGGCCGTG ATCGACACCG ACGTGCACCA GGGCGACGGG 
ACGGCGGCGA TCTTCGCCGC CGACGGCTCG GTGTTCACCT TCTCGGTGCA CGGCGAGAAG 
AACTACCCCT TCCGGAAGGG GAGGAGCGAC CTGGACGTCG GGCTGCCGGA CGGCGCCGAC 
GACGGGGCCT TCCTCGAGGC CCTCTCGGAG GGGCTGGAGC GGGTGCTCGA GGGCTTCCGG 
CCACAGCTCG CCGTCTACCT GGCCGGCGCC GACCCCTTCG CGGGCGACCG GCTGGGACGC 
CTGGCGGTGA GCAAGGAGGG GCTGGCGGAG CGGGACAGGA TCGTGCTGGA GGGCTGCCGG 
GGGCGGGGCG TCCCGGTGGC GGTCACGATG GCGGGGGGCT ACGCCCGCGA CATCTCGGAC 
ACCGTGGAGA TACACCTTAA CTCGGTGCTG CGGGCGGCGG CGCTGCACGC CGCAGGGAGC 
GGATGA
 
Protein sequence
MRVFYSDSYV IPLPEGHRFP MRKYAMLRER VAAGRASGGL REPRRAKDED LLRAHSPSYL 
RRVVSGSLGK QELRRLGFPW SERLVERSRR AAGGTIDACL AALEEGIAAN LAGGTHHAFA 
DRGEGFCVFN DAAVAIRAVQ AAGLVERAAV IDTDVHQGDG TAAIFAADGS VFTFSVHGEK 
NYPFRKGRSD LDVGLPDGAD DGAFLEALSE GLERVLEGFR PQLAVYLAGA DPFAGDRLGR 
LAVSKEGLAE RDRIVLEGCR GRGVPVAVTM AGGYARDISD TVEIHLNSVL RAAALHAAGS 
G