| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1096 |
|---|
| Symbol | |
|---|
| ID | 4116117 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | + |
|---|
| Start bp | 1127060 |
|---|
| End bp | 1130557 |
|---|
| Gene Length | 3498 bp |
|---|
| Protein Length | 1165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638035886 |
|---|
| Product | DNA polymerase III catalytic subunit, DnaE type |
|---|
| Protein accession | YP_643874 |
|---|
| Protein GI | 108803937 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.35277 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGCGGGGA CATCCGGGGA GTTCGCCCAC CTGCACTGCC ACTCGGAGTA CTCGATGCTG
GACGGGGCCA GCAGGATCCG GGATCTCGTC GCCTTCGCGC GCGAGGAGGG GATGCCGGGG
ATAGCGCTCA CCGACCACGG GAACATGTAC GGTGCGGTGC GCTTCTACCA GGAGGCCACG
AAGGCCGGGA TAAAGCCGGT GATGGGCTGC GAGGTCTACG TCACCGAGTG GGGCACCCCG
ATGTCCGACA GGTCCCGCTC CCGCTACTAC CACCTCACCC TGCTCGCCCG CACCCCCGAG
GGCTACAAGA ACCTCATGAA GCTCTCCACG GCCGGGTTTC TGCACGGCTT CTACTACAAG
CCGCGGGTGG ACGCCCGGAC GCTCCGGCGG CACGGCAGGG GGATCATCTG CCTCTCCGGG
TGCCTCTCGG CGGAGGTGCC GGCGCGCATC CTCGAGGGGC GGCTCGACAG GGCGCGCGAG
CTCCTGCTGG AGTACGCCGA GATCTTCGAC GCCGTCTACC TGGAGATGCA GGACCACGGC
CTCGAGGAGC AGCGGCGGGT AAACCGGGGG CTTCTGCGGC TGCACAGAGA GACCGGGCTC
CCGCTGGTGG CCACCAACGA CAGCCACTAC ACCGCGCGGT CCGACGCCCG CATGCACGAC
GTATTGCTGT GCATCGGCAC CGGCAAGTTC TACAACGACC CCAACCGGAT GCGCTTCCAC
GGCGAGGAGT TCTACGTCAA GCCCGTCGAG GAGATGGCCC GGCTCTTCGC CGACCACCCC
GAGGCGCTCG AGAACACCGC CGGGGTCGTC CGGAGCGTGG AGGGACCGGG CATAGAGCTC
GGCAAGACCC GCCTGCCCAA CTTCCCCAAG CCCGAGGGCT ACACCGGCAG CCAGTACCTC
AGGGAGCTGT GCGAGCGCGG GCTCAGAAAG CGCTACGGGC GGCGGGCCTC CGACCCCGAG
GTCCGGCGGC GGCTGGACTT CGAGCTCGAG ACCATAGCCC GCATGGGGTT CGAGGACTAC
TTCCTCATCG TGTGGGACTT CGTCAAGTAC GCCAAGGACC GCGGCATCGC GGTGGGGCCC
GGGCGGGGCT CGGCGGCGGG TTCCATCGTG GCCTACGCCC TGGAGATAAC CGACCTCGAC
CCGCTGCAGT ACTCGCTGCT CTTCGAGCGC TTCCTCAACC CCGACCGCAT CAGCATGCCC
GACGTGGACA TAGACTTCTC GGTCGCGGGA CGTTCGGAGG TCATGCGGTA CGTGACCGAG
AAGTACGGGG GGCACGAGCA CGTCGCCCAG ATCATCACCT TCGGGACCAT CGGGGCCAAG
GCCGCCATAA GGGATGCGGC CCGGATCTTC CAGTACCCCT ACGCCGAGAC CGACAAGCTC
GCCAAGCTCA TCCCCGAGAA GCCCGTCGGG ACCACGCTCA AGGACGTGCT CCGCAGGACC
GGGGACGGAC GCTACGAGCC CACCGAGAAG CACCCCGGGG CAGCCCGCGA GATACTGCGC
TTCGTAGAGC GGGACGAGGC GGCAAAGAGG GTGCTCGACA CCGCCTTCGA GATAGAGGGC
TACGCGCGCC ACGCCGGGAC CCACGCCGCG GGCGTCGTGA TCTCCGAGGA GCCGCTTACC
GACATCGTCC CGCTGCAGCG GGTGGCCAAG GACGAGAGCT CGGTGATGGT GCAGCATCCC
ATGAGCGACG TGGAGGCGCT CGGGCTGCTC AAGGTGGACT TCCTCGGCCT GCGGAACCTC
GACGTCATCG AGGAGACCCT CAGGATCGTC CGGGAGACCA CCGGCGAGCG GATAAACATC
CGCGAGATAC CGCTCGACGA CGAGGAGACC CTGAAGCTCT TCGCCCGCGG CGACACCTTC
GGGGTCTTCC AGTTCGAGTC CAGCGGCATG CAGCGCATGC TGCAGGAGGT CAGGCCCGAC
CGCTTCGACG ACCTGGTCGC GCTCAACGCC CTCTACCGCC CGGGGCCGAT GGACTACATC
CCCAACTTCA AGAAGGGCAA GCACGACCCC GAGAGCGTGC GCTACCCCGA CCCGCGCCTC
AAGCCCATCC TCGAGCCCAC CTACGGGGTC GCCGCCTACC AGGAGCAGCT CATGGAGATC
TCCAAGGTTT TGGGCGGCTT CACCCCCGGC GAGGCCGACA CCCTGAGGAA GGCCATCGGC
AAGAAGAAGA AGGACATCCT CGCCACCCTG CGGGACAAGT TCATGCGCGG GTGCGAGGAG
AACGGGGTGG AGCCCGGGGT GGCCCGGGAG CTCTGGGAGT GGATGGAGAA GGCCGGGGGC
TACTCCTTCA ACAAGAGCCA CTCGGCCTGC TACTCCTTCC TCGCCTTCCA GACCGCCTAC
CTCAAGGCAC ACTACCCGAC GGCCTACATG GCGGCGCTGC TCTCCAGCGT GATGAACACC
AAGGACCGGG TGCCGCAGTA CGTCGCCGAG GCGCGGGCGA TGGGCATAGA GGTGCTGCCC
CCGGACGTCA ACGAGAGCGG CAAGCGCTTC ACGGTGGTGG GAGACACCAT CCGGTTCGGG
CTCTCGGCGG TCAAGAACGT CGGGGACAAC ACGGTGGAGG CGATCCTCGC CTCCCGCGAG
GAGGGCGGGC CCTTCAGGGA CATCTTCGAC TTCTGCGAGC GGGTGGACCC CTCCACCTAC
AACAAGCGGA CGCTGGAGTC GCTCATCAAG TGCGGGGCCT TCGACCGCAC CGGGCACTCG
CGCAGCGCCA TGCTCGCGGT GCACACGGAG GCCGTCGAGC GCGTCTCGCG GGGGAGGAGG
GCCTCCTCGG AGAGCCAGTT CGCCATGTTC GACCTGGCGG AGGTCGCGCC CCCCAGGCCG
GAGGTCCCGG CGACGCCGGA CGACCCGCGG CGCAACCTGG AGTGGGAGAA GGAGACGCTC
GGGCTCTTCG TCTCCGACCA CCCGCTGCGC CCGGTCATGC ACAAGCTGAG AAAGCACGTG
GACCTCTCCC TCTCCGAGCT CGACGGGAGG CAGGACGGGG CGGTGGTCTG CGTGGCCGGG
CTGGCGACCT CGGTGCGGGT GAGCACGACC CGCAAGGGGG AAACGATGGC GGTGCTCCAG
CTCGACGACA CCCGGGGCAT GGCAGAGGTG CTGGTCTTCC CGCGGGTGTA CGCGGGCTGC
TCGGCCGGCA TCCGGGAGGA CGCCATCGTG AAGGTGAAGG GGCGGGTGGA CCGCAAGGAG
GGCATCCCGC GCATCGTGGC GATGGAGGTG GAGGAGCTGG AGCTCGCGCC GGGGCCCGAC
CCGGTGTACC TGCGCGCCGC GGCCTTCGAG GGGCGCCCGC GCTCGCTGGC GCTGCGCGCC
TTCGAGGTCG TCCGGCGCTA CCCGGGGGAG AGCCCCCTCA TCCTCGTGTC GGACGGCGGC
CGGCAGGAGG AGGTGTGCAC GGTGGATGAC TCCTCGGACC TCTTCGCCGA GCTCAAGCAG
CTTCTCGGGC CGCGGGCCGT CTCCGGCGCG CCGCCCGCCC CGCCCGAGCC CGCCGCGGCG
GTGGAGCGGG TCTCGTGA
|
|---|
| Protein sequence | MAGTSGEFAH LHCHSEYSML DGASRIRDLV AFAREEGMPG IALTDHGNMY GAVRFYQEAT
KAGIKPVMGC EVYVTEWGTP MSDRSRSRYY HLTLLARTPE GYKNLMKLST AGFLHGFYYK
PRVDARTLRR HGRGIICLSG CLSAEVPARI LEGRLDRARE LLLEYAEIFD AVYLEMQDHG
LEEQRRVNRG LLRLHRETGL PLVATNDSHY TARSDARMHD VLLCIGTGKF YNDPNRMRFH
GEEFYVKPVE EMARLFADHP EALENTAGVV RSVEGPGIEL GKTRLPNFPK PEGYTGSQYL
RELCERGLRK RYGRRASDPE VRRRLDFELE TIARMGFEDY FLIVWDFVKY AKDRGIAVGP
GRGSAAGSIV AYALEITDLD PLQYSLLFER FLNPDRISMP DVDIDFSVAG RSEVMRYVTE
KYGGHEHVAQ IITFGTIGAK AAIRDAARIF QYPYAETDKL AKLIPEKPVG TTLKDVLRRT
GDGRYEPTEK HPGAAREILR FVERDEAAKR VLDTAFEIEG YARHAGTHAA GVVISEEPLT
DIVPLQRVAK DESSVMVQHP MSDVEALGLL KVDFLGLRNL DVIEETLRIV RETTGERINI
REIPLDDEET LKLFARGDTF GVFQFESSGM QRMLQEVRPD RFDDLVALNA LYRPGPMDYI
PNFKKGKHDP ESVRYPDPRL KPILEPTYGV AAYQEQLMEI SKVLGGFTPG EADTLRKAIG
KKKKDILATL RDKFMRGCEE NGVEPGVARE LWEWMEKAGG YSFNKSHSAC YSFLAFQTAY
LKAHYPTAYM AALLSSVMNT KDRVPQYVAE ARAMGIEVLP PDVNESGKRF TVVGDTIRFG
LSAVKNVGDN TVEAILASRE EGGPFRDIFD FCERVDPSTY NKRTLESLIK CGAFDRTGHS
RSAMLAVHTE AVERVSRGRR ASSESQFAMF DLAEVAPPRP EVPATPDDPR RNLEWEKETL
GLFVSDHPLR PVMHKLRKHV DLSLSELDGR QDGAVVCVAG LATSVRVSTT RKGETMAVLQ
LDDTRGMAEV LVFPRVYAGC SAGIREDAIV KVKGRVDRKE GIPRIVAMEV EELELAPGPD
PVYLRAAAFE GRPRSLALRA FEVVRRYPGE SPLILVSDGG RQEEVCTVDD SSDLFAELKQ
LLGPRAVSGA PPAPPEPAAA VERVS
|
|---|
| |