Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rxyl_1065 |
Symbol | |
ID | 4116945 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rubrobacter xylanophilus DSM 9941 |
Kingdom | Bacteria |
Replicon accession | NC_008148 |
Strand | + |
Start bp | 1100294 |
End bp | 1101037 |
Gene Length | 744 bp |
Protein Length | 247 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 638035855 |
Product | MIP family channel protein |
Protein accession | YP_643843 |
Protein GI | 108803906 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0580] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) |
TIGRFAM ID | [TIGR00861] MIP family channel proteins |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.547307 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TTGGAGAGCT ACATCGCCGA GTTCATCGGC ACCATGGTCC TGATCCTCTT CGGCGACGGG GTGGTGGCCG CCGTGCTGCT CAGGGCCTCC AAGGCCGAGA ACTCGGGCTG GATCGTGATC ACCTTCGGCT GGGGAATGGC GGTCGCCATG GCGGTCTACG CCGTGGGCTG GGTGAGCGGG GCGCACATCA ACCCCGCGGT CACCGTAGCC CTTGCCGTGG TGGGCCAGTT CGACTGGGCG CAGGTCCCCG GCTACATCAT CGCCCAGTTC CTCGGGGCCT TCGTGGGGGC GGTGCTCGTG TGGCTGGCCT ACCTCAACCA CTGGGAGGGC ACGGCCGACC CGGTGCTCAA GCGCGGCGTC TTCTGCACCA TACCCCAGAT CCGCAACACC CCGGCGAACT TCGTCACCGA GGTGATCGGC ACCGCCGCCC TGCTGTTCGG CATCCTGGCC ATCCTGGGCA GCGGCGCCCA GATACAGGGC GGGCAGTCCG AGCTGTTCAC CGCCGGGCTC TTCCCGCTGC TGGTGGGGCT TCTGGTCTTC GCCATCGGGC TCTCGCTCGG CGGCCCCACC GGGTACGCCA TCAACCCGGC GCGCGACCTC GGGCCGCGCG TGGCCCACGC CGTCCTGCCC ATCCCCGGCA AGGGCGACTC GGACTGGTCG TACAGCTGGA TCCCGGTGGT CGCCCCTCTC GTGGGGGGGA TCATCGGCGC GGTGCTCTAC ACGGTGCTTG GTTTCGGGGA CTAG
|
Protein sequence | MESYIAEFIG TMVLILFGDG VVAAVLLRAS KAENSGWIVI TFGWGMAVAM AVYAVGWVSG AHINPAVTVA LAVVGQFDWA QVPGYIIAQF LGAFVGAVLV WLAYLNHWEG TADPVLKRGV FCTIPQIRNT PANFVTEVIG TAALLFGILA ILGSGAQIQG GQSELFTAGL FPLLVGLLVF AIGLSLGGPT GYAINPARDL GPRVAHAVLP IPGKGDSDWS YSWIPVVAPL VGGIIGAVLY TVLGFGD
|
| |