Gene Rxyl_0960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRxyl_0960 
Symbol 
ID4115923 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRubrobacter xylanophilus DSM 9941 
KingdomBacteria 
Replicon accessionNC_008148 
Strand+ 
Start bp997856 
End bp998917 
Gene Length1062 bp 
Protein Length353 aa 
Translation table11 
GC content73% 
IMG OID638035745 
Productphospho-2-dehydro-3-deoxyheptonate aldolase 
Protein accessionYP_643739 
Protein GI108803802 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 
TIGRFAM ID[TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.00600689 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGAACCA GTGATCTGCG CGTAGAGAGC ATCCGACCCC TGATCCCGCC CGCCATCCTC 
CTGGAGGAGC TCCCCCTCTC GGAGGACGGG GCCCTCACGG TGAGCCGGGC GCGGGAGGAG 
ATAGTGCGCA TCCTCGAGGG CGAGGACGAC CGCCTCATCG CCGTGGTCGG CCCCTGCTCG 
GTGCACGACA CCTCGGCGGC GCTGGAGTAC GCCCGGCGGC TGCGGGGGCT CGCGGAGGAG 
CTGCGCGGGG AGCTCTGCGT GATCATGCGG GTGTACTTCG AGAAGCCCCG GACCACGGTC 
GGGTGGAAGG GGCTCATCAA CGACCCGCAC CTGGACGGGA GCTTCGCCGT GAACGAGGGG 
CTCAGGATGG CGCGCGGCCT GCTGCTCGAC GTGGCGGAGC TGGGATTGCC CGCCGGCTGC 
GAGTTTCTGG ACCCCATCTC GCCGCAGTAC TTCACCGACG CGGTGGCCTG GGCGGCCATC 
GGGGCGCGCA CCACCGAGAG CCAGGTGCAC CGGCAGCTGG CCTCCGGCCT CTCCATGCCG 
GTGGGCTTCA AGAACGGCAC CGGCGGCGGG GTGCAGATAG CGGTGGACGC GGTGCGCGCC 
GCCGCCCACC CGCACAGCTT CCCCGGGGTG ACCCGGCAGG GGCTCGCGGC GGTCGTCACC 
ACCACCGGCA ACCCGGACTG CCACGTCATC CTGCGCGGCG GCAGGAGCGG CCCGAACTAC 
GACGAGCGGA GCGTCGGGGA GGCCCTGGAG GCGCTGCGCC GGGCCGGCCT CCCGCCCCGC 
CTGATGGTGG ACGCCAGCCA CGCCAACAGC GGCAAGGACT ACCGCCGGCA GCCGCTCGTG 
ATCCGGGACG TGGCCGACCA GGTCGCCCGG GGCCAGAGGG GGATCGTGGG CGTGATGCTG 
GAGAGCTTCC TGGTCGAGGG GAGCCAGGAG CTCACGGACC GCTCCCGGCT GACCTACGGC 
CAGAGCATCA CCGACTCCTG CATGGGCTGG GAGATGACGG TCCCCACCCT GCGCGAGCTG 
GCCGAGGCGG TCAGGGCCCG GCGCACCGTC CGCGTCGGCT GA
 
Protein sequence
MRTSDLRVES IRPLIPPAIL LEELPLSEDG ALTVSRAREE IVRILEGEDD RLIAVVGPCS 
VHDTSAALEY ARRLRGLAEE LRGELCVIMR VYFEKPRTTV GWKGLINDPH LDGSFAVNEG 
LRMARGLLLD VAELGLPAGC EFLDPISPQY FTDAVAWAAI GARTTESQVH RQLASGLSMP 
VGFKNGTGGG VQIAVDAVRA AAHPHSFPGV TRQGLAAVVT TTGNPDCHVI LRGGRSGPNY 
DERSVGEALE ALRRAGLPPR LMVDASHANS GKDYRRQPLV IRDVADQVAR GQRGIVGVML 
ESFLVEGSQE LTDRSRLTYG QSITDSCMGW EMTVPTLREL AEAVRARRTV RVG