| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_0946 |
|---|
| Symbol | |
|---|
| ID | 4116788 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | + |
|---|
| Start bp | 984484 |
|---|
| End bp | 985983 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 638035731 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_643725 |
|---|
| Protein GI | 108803788 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0298167 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGCCGC TGCTGGAGAT GCGCGGGATC ACCAAGCGCT TCCCCGGCGT CGTCGCGCTC
GACGGGGTGG ACTTCGAGCT TCTGCCGGGC GAGGTGCACG TCCTGCTCGG GGAGAACGGG
GCCGGCAAGA GCACCCTCAT CAAGATCCTC TCCGGCGCCT ACCGCCCCGA CGGCGGCGAG
ATCCTCATGG ACGGGCGCCC CGTGGAGATC CGCTCCGCCG CCGAGGCCCG GCGCCTCGGG
ATAAGCACCA TCTACCAGGA GTTCAACCTC GTCCCCCAGC TCACCGTCGC CGAGAACATC
CACCTCGGGC GCCAGCCCCG GCGGTTCGGG GTGGTGGACC GGGGCGCGAT GGAGCGGGCG
GCGCGCGAGC TGCTGGAGAG GCTCGGGATA AGGGTGGACC CGCGGGCGCG CGTGGCCGAC
CTCGGGGTTG CCCGGCGGCA GATGGTCGAG ATCGCCAAGG CGCTGGGGCT CAGGGCGCGG
GTGCTCATCA TGGACGAGCC CACCGCCGCG CTCTCCGAGC GGGAGGTCCG GCAGCTCTTC
CGGATCGTCC GCCGGCTCAA GGAGGAGGGG GTGGGCGTAG TCTTCATCTC CCACCACCTG
GAGGAGGTGG CGGAGATCGG GGAGCGGGTG ACCGTGCTGC GCGACGGGAG GCTGGTGGGG
CGGGTGTCCG CGGACGCCGG GCGAGACGAG CTGGTGCGGA TGATGGTCGG GCGGTCCATC
GAGGAGCAGT TCCCCCGCCG CCGCACCGAG CCCGGGGAGG TGCTGCTGGA GGTGCGCGGC
CTCGGCCGGC GGGGGGTGCT GCGGGACGTC TCGCTGCGGG TGCGGGCCGG GGAGATCGTC
GGGGTGGCCG GGCTCGTGGG GGCCGGGAGG ACCGAGCTCG CCCGGGCCAT CTTCGGGCTC
GACCCGGCGG ACTCGGGGGA GGTGCTGGTG GAGGGGCGGC CGCTCGAGGC CCCGGGACCG
CAGGAGGCCC GGCGGCGGGG GGTGGGGTTC GTCACCGAGG ACCGGCAGGG GCAGGGCATC
GTGCCGCCGC TCTCCGTGGC CGAGAACCTC GCGCTCGCCT CGCTGGAGCG TTACCTCAGG
GGCCGGGTGC TCGTGGACCG GGGGCGCCTC TTGCGCCGGG CTCGGGAGAT CGTGCAGAGC
CTCAGGATAA GGACCCCCTC GCTGGAGCAG GAGATCCGCT ACCTCTCCGG GGGCAACCAG
CAGAAGGCGG TGATAGGGAG GTGGATGCTC GCCGGCAGCC GCGTGCTCAT CATGGACGAG
CCCACCCGCG GGGTGGACGT GGGGGCGAAG GTCGAGATCT ACGAGCTCAT GAACCGGCTC
ACGGAGGAGG GCGCGGGGAT ACTCATGATC TCCAGCGAGA TGCCGGAGGT GCTGGGGATG
AGCGACCGGG TGCTGGTGAT GAGCGGCGGC AGGATAACCG GCGAGCTCCC CGCCGAAGAG
GCCACCCAGG AGCGGGTGAT GGGGCTCGCC ACCGCCGGAA GCGAGGCCGC CGTTGGCTAG
|
|---|
| Protein sequence | MRPLLEMRGI TKRFPGVVAL DGVDFELLPG EVHVLLGENG AGKSTLIKIL SGAYRPDGGE
ILMDGRPVEI RSAAEARRLG ISTIYQEFNL VPQLTVAENI HLGRQPRRFG VVDRGAMERA
ARELLERLGI RVDPRARVAD LGVARRQMVE IAKALGLRAR VLIMDEPTAA LSEREVRQLF
RIVRRLKEEG VGVVFISHHL EEVAEIGERV TVLRDGRLVG RVSADAGRDE LVRMMVGRSI
EEQFPRRRTE PGEVLLEVRG LGRRGVLRDV SLRVRAGEIV GVAGLVGAGR TELARAIFGL
DPADSGEVLV EGRPLEAPGP QEARRRGVGF VTEDRQGQGI VPPLSVAENL ALASLERYLR
GRVLVDRGRL LRRAREIVQS LRIRTPSLEQ EIRYLSGGNQ QKAVIGRWML AGSRVLIMDE
PTRGVDVGAK VEIYELMNRL TEEGAGILMI SSEMPEVLGM SDRVLVMSGG RITGELPAEE
ATQERVMGLA TAGSEAAVG
|
|---|
| |