| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_0647 |
|---|
| Symbol | |
|---|
| ID | 4116513 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | + |
|---|
| Start bp | 681145 |
|---|
| End bp | 682233 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 80% |
|---|
| IMG OID | 638035432 |
|---|
| Product | nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase |
|---|
| Protein accession | YP_643429 |
|---|
| Protein GI | 108803492 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2038] NaMN:DMB phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR03160] nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00417708 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCACCG CCACTAGCGG CGCCACGCCC CCGGAGGGGC GGGTCGGGGA GCTCGCGCGC
GGCGTCGCCC CTCCCGACGG GGCCGCGGCG CGGGAGGCCG GCGAGCGCCA CCTGCGCCTC
ACCAAGCCGC CGGGGAGCCT GGGGGAGCTG GAGGCGCTCG GGGCGCGCCT CGCGGGGATG
GCGGGGCGCT GCCCCCCGCC GGTCCCGGAG CGCCCGGCGG TCCTCGTCGC CGCCGGGGAC
CACGGCGTCC TCTCCCGGGG GGTCTCCCCC TGGCCGCAGG AGGTGACCGC CGAGATGGTG
CGCAACTTCT GCCGCGGCGG GGCGGCGGTG AACGCCATCG CCGCCGAGGT GGGGGCGCGG
GTGCTGGTGC TGGACGCGGG GGTCGCCGGA GAGACGGAGC CCCACCCCCT GCTGCGGCGG
GCGAGGGTGC GCCCCGGCAC CGCCGACCTC AGCCGGGGGG CGGCGATGGG CCGGGAGGAG
GCCGCCCGGG CGCTGCTGGC GGGGGCGGAG GCGGCGGGGG CCCTGCTCCG GGAGGGGGCC
GACCTCCTGG TGACCGGGGA TATGGGCATC GGGAACACCA CCCCCGCCGC CTGCCTCGTC
GCCGCCTTCA CCGGCCGCCC GGCGGCGGAG GTCACCGGCC GGGGCACCGG GATAGACGAC
GCGACGCTCG CCCTCAAGGT GCGGGTGGTG GAGGAGGCCC TTGGGCTCCA CCGCCCGGAC
CCCTCCGACC CTTTGGGGAC GCTCGCCGCC CTCGGCGGCC TGGAGCACGC GGCGCTCGCC
GGGGCGATGC TGGAGGGCGC CGCCCGGCGG GTCCCCGTGG TGCTGGACGG GGTCTCCTCC
TGCGCGGCGG CGCTGGTGGC GGCGGCCCTC TCCCCGCCCG CCGCCGGCTA CATGGTCGCC
GGACACCTCT CCGCCGAGCC GGGGGCCGGC GCCGCCCTCG AGGCGCTCGG CCTGCGGCCC
CTGCTTGATC TGGGGATGCG GCTGGGGGAG GGGACGGGGG GGCTTCTCGC CGTGCCGCTC
GTGCGGGCGG CGGCCCGCGT CCTCTCGGAG ATGGCGACCT TCGAGGAGGC CGGGGTGAGC
GGGGGGTGA
|
|---|
| Protein sequence | MGTATSGATP PEGRVGELAR GVAPPDGAAA REAGERHLRL TKPPGSLGEL EALGARLAGM
AGRCPPPVPE RPAVLVAAGD HGVLSRGVSP WPQEVTAEMV RNFCRGGAAV NAIAAEVGAR
VLVLDAGVAG ETEPHPLLRR ARVRPGTADL SRGAAMGREE AARALLAGAE AAGALLREGA
DLLVTGDMGI GNTTPAACLV AAFTGRPAAE VTGRGTGIDD ATLALKVRVV EEALGLHRPD
PSDPLGTLAA LGGLEHAALA GAMLEGAARR VPVVLDGVSS CAAALVAAAL SPPAAGYMVA
GHLSAEPGAG AALEALGLRP LLDLGMRLGE GTGGLLAVPL VRAAARVLSE MATFEEAGVS
GG
|
|---|
| |