Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rxyl_0614 |
Symbol | |
ID | 4116384 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rubrobacter xylanophilus DSM 9941 |
Kingdom | Bacteria |
Replicon accession | NC_008148 |
Strand | + |
Start bp | 642916 |
End bp | 644739 |
Gene Length | 1824 bp |
Protein Length | 607 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 638035400 |
Product | EmrB/QacA family drug resistance transporter |
Protein accession | YP_643397 |
Protein GI | 108803460 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.222069 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGCGG CCGGGCACAA GAACATCATC TTCATCGGGG TGGCTCTCGG GATGCTCTCC GCGGCTGCCG CCCAGACCAT CGTCTCCCCG GCCATGCCGC GCATCGTGGC CGAGCTCGGG GGGATGAACC ACTACAGCTG GGTGGCCACG GCGGCGCTGC TCGCCTCGGC CGTCACCGTC CCGGTGGTGG GCAAGCTCTC CGACATGTAC GGCCGGCGGG GCTTCTTCAT CTGGGGGCTC GTGGTGTTCA TGGCCGGCTC GGCGCTCTCC GGGGCGGCGC AGGGCTTCTG GTGGCTCGTG GCGGCGCGGG CGGTGCAGGG GCTCGGGATG GGCACCATCA TGCCGCTCGC CCAGACCATC ATCGGGGACA TCATAAGCCC GCGGGAGCGG GGCCGGTACG TGGGGTATCT GGGGGCCGTC TTCGGGGTGG CCTCCATCAC CGGGCCGCTG GTGGGCGGCT GGATCACGGA CAACTTCTCC TGGCGGTGGC TCTTCTACGT CAACCTGCCG CTGGGGGTCG CCGCGCTGGC GTTCGTCGTC GCCTACCTGC ACCTGCCGCA CACCCCGCGG CGGCACGCCG TGGACTACGC GGGCTTCGCG ACCCTCGCGG TGGGCCTCTC GGCGGTGCTG CTGGCCACCT CCTGGGGCGG GACCGAGTAC CCGTGGGGCT CGTGGCAGAT CGTCGGGCTC TACGGGCTCG GGGCGGCGGT GCTCGCCGTC TTCCTCGTCA ACGAGCACCG CGCGGAGGAG CCCGTGCTCC CCCTGAGGCT CTGGAAGAGC GGCGTCTTCA CCTTCTCCAA CATCGCCAAC CTCGCCATCT CCATGGGCAT GTTCGGGGCC ATCTACTACA TCCCCGTCTT CGCCCAGGGG GTGCTCGGGG TCAGCGTCAC CAACTCCGGG GCCATCACGC TCCCCCTCAT GCTCGCGGCG CTGCCGGTCA GCGTGCTGGT GGGGCGCATG ATCACGCGCA CCGGCCGCTA CAAGCTCTTT CTGCTGGCCG GGGTGGCGGT GATGTGGCTG GGGTACCTGA TCCTGAGCAA CCTGGACTAC GGCTCCACCC AGGCCGAGCT GACGCTGGCG ATGGTCGTGG TGGGGCTCGG GCTCGGCGCG GTGATGCAGA CCTTCACGCT CGTGGTGCAG AACGCCGTCA CCCGGGAGGA TCTCGGGGTG GCCACCGCCG CCACGCAGTT CACCCGCTCC ACCGGGGCCA CCGTGGGGAT CGCCGTCTTC GGGACCATCA TGACCAACCG GATGCAGACC GAGATCCCGG CCCACCTGCC CCCGGCCGCC CGCCGGCACT CCGCGGCGCT CTTCGGGGAC TCCGGAGGGG GCGTGGGGGC GGTGCTCGAC CCCTCCTCGC TCTCCCACCT GCCCGCGCCG GTCGTCGAGG GGATCCAGCA GGGCCTCGCG GCGGCCATGC ACCCGGTCTT CGTGGCCGGG CTGCCGGTGC TCGCCGTGGC CTTCCTCGCC ACCCTGCTGG TGAAGGAGCT GCCGCTGCGC ACCGTGGCCT TCGCGGACAT GGACCGGGCG GTGCCCGGCG GGCGGGACGA CGAGGCGCGG CGGCTGCTGC TCTCCGGGGT CGCGCTGGAC TGGGCGGCCC GGAGGATAGA GAGCGCCAAC GGCGACGCGC CGCACCTGCT GCGGGCGGCG GCATCCCTCG TCGGGCCGGA CGGCGGGCGC TCGGAGAGGG AGCGCGCGCT GCGGGCGAGC CGGGAGGTGA TCCGCCCGGC CGCCCGGCTG CTGCTGGCGG GGTACCTGCT CCGGCGGCGC CCCGCCTCGG GGGCGGCAGC CGGAGAGAAC GGGAGAGAGG AGGTGGTTCG CTAG
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Protein sequence | MSAAGHKNII FIGVALGMLS AAAAQTIVSP AMPRIVAELG GMNHYSWVAT AALLASAVTV PVVGKLSDMY GRRGFFIWGL VVFMAGSALS GAAQGFWWLV AARAVQGLGM GTIMPLAQTI IGDIISPRER GRYVGYLGAV FGVASITGPL VGGWITDNFS WRWLFYVNLP LGVAALAFVV AYLHLPHTPR RHAVDYAGFA TLAVGLSAVL LATSWGGTEY PWGSWQIVGL YGLGAAVLAV FLVNEHRAEE PVLPLRLWKS GVFTFSNIAN LAISMGMFGA IYYIPVFAQG VLGVSVTNSG AITLPLMLAA LPVSVLVGRM ITRTGRYKLF LLAGVAVMWL GYLILSNLDY GSTQAELTLA MVVVGLGLGA VMQTFTLVVQ NAVTREDLGV ATAATQFTRS TGATVGIAVF GTIMTNRMQT EIPAHLPPAA RRHSAALFGD SGGGVGAVLD PSSLSHLPAP VVEGIQQGLA AAMHPVFVAG LPVLAVAFLA TLLVKELPLR TVAFADMDRA VPGGRDDEAR RLLLSGVALD WAARRIESAN GDAPHLLRAA ASLVGPDGGR SERERALRAS REVIRPAARL LLAGYLLRRR PASGAAAGEN GREEVVR
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