Gene Rxyl_0614 details

Gene Information

• Locus tag: Rxyl_0614
• ID: 4116384
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rubrobacter xylanophilus DSM 9941
• Kingdom: Bacteria
• Replicon accession: NC_008148
• Strand: +
• Start bp: 642916
• End bp: 644739
• Gene Length: 1824 bp
• Protein Length: 607 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 638035400
• Product: EmrB/QacA family drug resistance transporter
• Protein accession: YP_643397
• Protein GI: 108803460
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG2814] Arabinose efflux permease
• TIGRFAM ID: [TIGR00711] drug resistance transporter, EmrB/QacA subfamily

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.222069
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGCGG CCGGGCACAA GAACATCATC TTCATCGGGG TGGCTCTCGG GATGCTCTCC 
GCGGCTGCCG CCCAGACCAT CGTCTCCCCG GCCATGCCGC GCATCGTGGC CGAGCTCGGG 
GGGATGAACC ACTACAGCTG GGTGGCCACG GCGGCGCTGC TCGCCTCGGC CGTCACCGTC 
CCGGTGGTGG GCAAGCTCTC CGACATGTAC GGCCGGCGGG GCTTCTTCAT CTGGGGGCTC 
GTGGTGTTCA TGGCCGGCTC GGCGCTCTCC GGGGCGGCGC AGGGCTTCTG GTGGCTCGTG 
GCGGCGCGGG CGGTGCAGGG GCTCGGGATG GGCACCATCA TGCCGCTCGC CCAGACCATC 
ATCGGGGACA TCATAAGCCC GCGGGAGCGG GGCCGGTACG TGGGGTATCT GGGGGCCGTC 
TTCGGGGTGG CCTCCATCAC CGGGCCGCTG GTGGGCGGCT GGATCACGGA CAACTTCTCC 
TGGCGGTGGC TCTTCTACGT CAACCTGCCG CTGGGGGTCG CCGCGCTGGC GTTCGTCGTC 
GCCTACCTGC ACCTGCCGCA CACCCCGCGG CGGCACGCCG TGGACTACGC GGGCTTCGCG 
ACCCTCGCGG TGGGCCTCTC GGCGGTGCTG CTGGCCACCT CCTGGGGCGG GACCGAGTAC 
CCGTGGGGCT CGTGGCAGAT CGTCGGGCTC TACGGGCTCG GGGCGGCGGT GCTCGCCGTC 
TTCCTCGTCA ACGAGCACCG CGCGGAGGAG CCCGTGCTCC CCCTGAGGCT CTGGAAGAGC 
GGCGTCTTCA CCTTCTCCAA CATCGCCAAC CTCGCCATCT CCATGGGCAT GTTCGGGGCC 
ATCTACTACA TCCCCGTCTT CGCCCAGGGG GTGCTCGGGG TCAGCGTCAC CAACTCCGGG 
GCCATCACGC TCCCCCTCAT GCTCGCGGCG CTGCCGGTCA GCGTGCTGGT GGGGCGCATG 
ATCACGCGCA CCGGCCGCTA CAAGCTCTTT CTGCTGGCCG GGGTGGCGGT GATGTGGCTG 
GGGTACCTGA TCCTGAGCAA CCTGGACTAC GGCTCCACCC AGGCCGAGCT GACGCTGGCG 
ATGGTCGTGG TGGGGCTCGG GCTCGGCGCG GTGATGCAGA CCTTCACGCT CGTGGTGCAG 
AACGCCGTCA CCCGGGAGGA TCTCGGGGTG GCCACCGCCG CCACGCAGTT CACCCGCTCC 
ACCGGGGCCA CCGTGGGGAT CGCCGTCTTC GGGACCATCA TGACCAACCG GATGCAGACC 
GAGATCCCGG CCCACCTGCC CCCGGCCGCC CGCCGGCACT CCGCGGCGCT CTTCGGGGAC 
TCCGGAGGGG GCGTGGGGGC GGTGCTCGAC CCCTCCTCGC TCTCCCACCT GCCCGCGCCG 
GTCGTCGAGG GGATCCAGCA GGGCCTCGCG GCGGCCATGC ACCCGGTCTT CGTGGCCGGG 
CTGCCGGTGC TCGCCGTGGC CTTCCTCGCC ACCCTGCTGG TGAAGGAGCT GCCGCTGCGC 
ACCGTGGCCT TCGCGGACAT GGACCGGGCG GTGCCCGGCG GGCGGGACGA CGAGGCGCGG 
CGGCTGCTGC TCTCCGGGGT CGCGCTGGAC TGGGCGGCCC GGAGGATAGA GAGCGCCAAC 
GGCGACGCGC CGCACCTGCT GCGGGCGGCG GCATCCCTCG TCGGGCCGGA CGGCGGGCGC 
TCGGAGAGGG AGCGCGCGCT GCGGGCGAGC CGGGAGGTGA TCCGCCCGGC CGCCCGGCTG 
CTGCTGGCGG GGTACCTGCT CCGGCGGCGC CCCGCCTCGG GGGCGGCAGC CGGAGAGAAC 
GGGAGAGAGG AGGTGGTTCG CTAG 

 

Protein sequence

MSAAGHKNII FIGVALGMLS AAAAQTIVSP AMPRIVAELG GMNHYSWVAT AALLASAVTV 
PVVGKLSDMY GRRGFFIWGL VVFMAGSALS GAAQGFWWLV AARAVQGLGM GTIMPLAQTI 
IGDIISPRER GRYVGYLGAV FGVASITGPL VGGWITDNFS WRWLFYVNLP LGVAALAFVV 
AYLHLPHTPR RHAVDYAGFA TLAVGLSAVL LATSWGGTEY PWGSWQIVGL YGLGAAVLAV 
FLVNEHRAEE PVLPLRLWKS GVFTFSNIAN LAISMGMFGA IYYIPVFAQG VLGVSVTNSG 
AITLPLMLAA LPVSVLVGRM ITRTGRYKLF LLAGVAVMWL GYLILSNLDY GSTQAELTLA 
MVVVGLGLGA VMQTFTLVVQ NAVTREDLGV ATAATQFTRS TGATVGIAVF GTIMTNRMQT 
EIPAHLPPAA RRHSAALFGD SGGGVGAVLD PSSLSHLPAP VVEGIQQGLA AAMHPVFVAG 
LPVLAVAFLA TLLVKELPLR TVAFADMDRA VPGGRDDEAR RLLLSGVALD WAARRIESAN 
GDAPHLLRAA ASLVGPDGGR SERERALRAS REVIRPAARL LLAGYLLRRR PASGAAAGEN 
GREEVVR