Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rxyl_0601 |
Symbol | |
ID | 4116371 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rubrobacter xylanophilus DSM 9941 |
Kingdom | Bacteria |
Replicon accession | NC_008148 |
Strand | - |
Start bp | 628534 |
End bp | 629619 |
Gene Length | 1086 bp |
Protein Length | 361 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 638035387 |
Product | PDZ/DHR/GLGF |
Protein accession | YP_643384 |
Protein GI | 108803447 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.367147 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGATCGGAA GGTACAGGAT AACGCTCGCG GCGGCCGCGG CGCTGCTCGC CGCGCTCCTC CTAGCGGGGG CCTGCTCGGA GGAGAACGCC CGGCAACCCC ACGCCCCCGA CCAGAGCGCC GCGCAGGCCG CCCAGAACAT CCCGCAGGAC GAGCCGGTGG CGCGGGTGGC CGCGAAGGTG GAGCCGAGCG TGGTGCAGGT CAACACCCGG GCCATCCAGC TCACCCCCTT CGGGCCGGAG AGCCAGAGCG GGGTGGGCAG CGGGGTCATC TACCGGGAGG ACGGCTACAT CATCACCAAC AACCACGTGG TGGAGGGGGC CGACGAGGTG AACGTGGCCT TCGCCGACGG CTCCACCGAG CGCGGCCGGG TGGTGGGCTC GGACCCGCGC ACGGACATCG CGGTGGTCAA GGTGGACCGG GACAGCCTCC CCGCCGCCGC CTTCAGCGAC GCCGAGCCGG TCGTGGGCCA GCTCGCGGTG GCCATAGGCA GCCCCTCGGG CTTCGAGTCC ACGGTGACCG CCGGGGTGGT GAGCGGGCTG GACCGCGAGA TCCCGCCGCA GCTCACCGGC ACCGGCTACC AGATCCCCTC GCTGACCGGC CTGATCCAGA CGGACGCCGC GATCTCGCCG GGCTCCTCGG GCGGCGCCCT GGCGAACCGC TCCGGCGAGA TCATCGGGAT CAACGTGGCC TACCTGCCGC CCCAGACGGG GGCGGAGAGC ATCGGGTTCG CGATCCCCGC CTCGGTGGCG ACCTCGGTGG CCGACCAGCT CATCGAGAGC GGCGAGGTGC GCGCGCCGTT CCTGGGGATC GTGCCGGTGG ACCTGACGAG CCAGGAGGCG GAGCTCTACG GCCTCGAGGT GACCTCGGGC GCCCTGGTGG CGCGGGTGGA GCCGGGGAGC CCGGCCGACG AGGCGGGCCT GCGCCGCGGC GACATCATCG TGGCGCTGGA CGGCACGGAG ATCCGCAGCT CCGGCGACCT CTACTCAGCC CTCAGGGACT ACCGCCCGGG CGACGAGGTG CGCCTGACGG TGGTCCGCAA CGGCGAACGC CAGAGGATCG AGGTGACCCT CGGTGAGCGG CCGTAG
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Protein sequence | MIGRYRITLA AAAALLAALL LAGACSEENA RQPHAPDQSA AQAAQNIPQD EPVARVAAKV EPSVVQVNTR AIQLTPFGPE SQSGVGSGVI YREDGYIITN NHVVEGADEV NVAFADGSTE RGRVVGSDPR TDIAVVKVDR DSLPAAAFSD AEPVVGQLAV AIGSPSGFES TVTAGVVSGL DREIPPQLTG TGYQIPSLTG LIQTDAAISP GSSGGALANR SGEIIGINVA YLPPQTGAES IGFAIPASVA TSVADQLIES GEVRAPFLGI VPVDLTSQEA ELYGLEVTSG ALVARVEPGS PADEAGLRRG DIIVALDGTE IRSSGDLYSA LRDYRPGDEV RLTVVRNGER QRIEVTLGER P
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