| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_0353 |
|---|
| Symbol | |
|---|
| ID | 4115076 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | + |
|---|
| Start bp | 378906 |
|---|
| End bp | 380468 |
|---|
| Gene Length | 1563 bp |
|---|
| Protein Length | 520 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638035143 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_643141 |
|---|
| Protein GI | 108803204 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | [TIGR01923] O-succinylbenzoate-CoA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.504179 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGAGGGCT ACCCGAACGC CAACTGGCGC AAGCTCATAC TCGGCGAGAT GCTCGCCAGG
GTCTCCCGCA AGCAGCCGGA AAAGCTCGCG CTCGTCTTCG AGGGGACGCG CCTCACCTTC
GCCGACCTCG ACGGGCGGGT GAATCGCCTC GCCAACGCCC TCGCTAGCAG GGGCGTGGCC
AAGGGGGACA AAGTCGCCGT GCTCTCGTAC AACTCCCACC GGGTGGTCGA AGCCTACTTC
GCCTGCCACA AGCTCGGCGC CGTGGCCGTC CCGGTCAACT TCCGCATGGT CGAAGGAGAG
GTCCGCTACG TCCTCTCCGA CTCCGGCGCG CGCACCCTGC TCTTCGGCGA GGGCTTCGGC
GGCATGGCGG AGAGCATCGT GGGCGACGGC GCCGTCGCCC TGGCGGTGGA CATGGACGGC
GACGCCGGAG GGTTCGCCGA GGGCTACGAG CGGCTCGTCT CCACCGCCGG TCCCGGCGAG
CCGGCGGTGG AGGTGGACGA CGACGATGAC GCCTTCATCA TGTACACCTC CGGGACCACG
GGCTTCCCGA AGGGGGCCGT CCTCACGCAC AAAAACCTGT GGATGAACAC GGCCAACTGG
ATCATGGAGA TGCAGGTGAC CGGGGGCTCG GTGTGGCTCT CGGGGCTGCC GCTCTTCCAC
ATCGGCGGCG TAAACGGCGT GCTGCCCTTT ATCTACCTCG GCGGCACCAA CGTCATCACC
CCGAGCGGTG GCTTCGACCC GGAGGCGATG CTGCGTCTCA TGGAGAAGGA GAGGGTCACC
CACTGCTACT TCGTCCCCGC GCAGTGGCAG CAGTTCCTCG AGCTCGACCT CTCCCGCTAC
GACCTCGGCA GCCTGCGCAA GGCGCTCTGG GGTGCCTCGC TCGCGCCGAT GCGGGTGCTG
GAGGGGATGG CGGAGGCCTT CCCTTCGGTC GAGATCGTCA ACGCCTTCGG CCAGACCGAG
ATGTCCTCCA ACACCACCTT CCTGAAGGGC GAGGACGCGG TGAGGAAGAT GGGCTCCGTC
GGGCTTCCCG CCGTCAACGT CGAGGTCCGG ATCGTGGACG ACGAGAACAG GGACGTGCCC
GAGGGGGAGG TCGGGGAGAT CGTCTACCGC GGCCCCACCG TGTTCAAGGG CTACCACAAC
GACCCCGAGG CCACGGCGGA GGCCTTCGAG GGCGGGTGGT TCCACTCCGG GGACCTGGTG
CGCCGGGACG GGGAGGGCTA CATCTACGTG GTGGACCGCA AAAAAGACAT GTTCATAAGC
GGCGGCGAGA ACATCTACCC CGCCGAGGTG GAGCGTGTGA TCTCCACGCA CCCCGCGGTC
GCGGAGGTCG CCGTGATAGG CGTGCCGCAC GAGAAGTGGG GCGAGACGCC CAAGGCCCTC
GTCGTCCCCA GGGAGGGCCA GAGGCTCACC AGAGAAGAGG TCATAGAGCA CTGCCGCAAG
CACCTCGCCG GCTACAAGAA GCCCACCTAC GTTGCCTTCG TGGAGGAGCT TCCGCGCAAC
GCCGCGGGCA AGGTGCTCAA GCGGGAGCTG AGGCGGCTGC ACGGCGGAAG CGACGACGCG
TAG
|
|---|
| Protein sequence | MEGYPNANWR KLILGEMLAR VSRKQPEKLA LVFEGTRLTF ADLDGRVNRL ANALASRGVA
KGDKVAVLSY NSHRVVEAYF ACHKLGAVAV PVNFRMVEGE VRYVLSDSGA RTLLFGEGFG
GMAESIVGDG AVALAVDMDG DAGGFAEGYE RLVSTAGPGE PAVEVDDDDD AFIMYTSGTT
GFPKGAVLTH KNLWMNTANW IMEMQVTGGS VWLSGLPLFH IGGVNGVLPF IYLGGTNVIT
PSGGFDPEAM LRLMEKERVT HCYFVPAQWQ QFLELDLSRY DLGSLRKALW GASLAPMRVL
EGMAEAFPSV EIVNAFGQTE MSSNTTFLKG EDAVRKMGSV GLPAVNVEVR IVDDENRDVP
EGEVGEIVYR GPTVFKGYHN DPEATAEAFE GGWFHSGDLV RRDGEGYIYV VDRKKDMFIS
GGENIYPAEV ERVISTHPAV AEVAVIGVPH EKWGETPKAL VVPREGQRLT REEVIEHCRK
HLAGYKKPTY VAFVEELPRN AAGKVLKREL RRLHGGSDDA
|
|---|
| |