| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_0327 |
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| Symbol | |
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| ID | 4116059 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rubrobacter xylanophilus DSM 9941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008148 |
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| Strand | - |
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| Start bp | 350965 |
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| End bp | 353022 |
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| Gene Length | 2058 bp |
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| Protein Length | 685 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 638035116 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_643115 |
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| Protein GI | 108803178 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGGAGCCC CCACCCTCCC GCGTATAATC CCCCCCGTGG CCGAGAAGCT CGCCGAGGCA
AGACAGCGGG TAGAGGAGCT GCGCGAGCAG ATCCGCTACC ACAACCGCAA GTACTACGTC
GAGGACGCGC CGGAGATCTC CGACGCCGAG TACGACGCCC TCTACCGGGA GCTGGAGGAG
CTCGAGAGCC GCTTCCCGGA GCTCGTCACC CCCGACTCCC CCACCCAGCG GGTCGGCGGG
GAGCCGCTGG AGGAGTTCGA GGAGGTCCGG CACGCCGTCC CCATGCTCTC CCTGCAGAAC
GCCCGCAGGG TCGAGGAGCT CCGGGAGTGG GACGCGCGCG TCCGGCGCCT GCTCGGCCCG
GAGGAGGAGG GGCGGCTGCG CTACGTGACC GAGCTCAAGA TAGACGGGCT GGCCGTCTCG
CTGCGCTACG AGAACGGGCG CCTCGTCCGG GGCGCGACCC GGGGCAACGG CTTTGTCGGG
GAGGACGTGA CCCGGCAGCT GCGCACCATC CGCTCCGTCC CCGACCGGCT CGACGACGAC
CCCCCGGGGG TGCTGGAGCC CCGGGGCGAG GTGTACATAA AGCTCAAGGA CTTCGAGGAG
TTCAACCGGC GGCGTCAGGA GCGGGGCGAG CGGCCCTTCG CCAACCCCCG CAACCTGGCG
GCGGGCTCCG TGCGGCAGCT GGACCCCAGG GTCACCGCCC GGCGCCCCCT CACCATCTAC
CTCTACGGCG TGGGGGAGGG CTACGAGAAC TTCGAGAGCC ACTCCGAGGC GCTCGCCGCG
CTCAGGCGCT ACGGGCTCCG GGTAAACCCC CACACCGTGC ACGGGGACAT AGACTCGGTG
ATAGAGGAGT GCGGGCGGTG GGCCAAGAAG CGGGAGGCGC TGGACTTCCA GGTGGACGGG
GTCGTCGTCA AGGTGGACTC CCGCGAGCAG CAGGAGAGGC TCGGCGCGGT GCAGAAGGCC
CCCCGGTGGG CCATAGCGTA CAAGTTCGAG CCGCTCGCCG GGCGCACCCG GCTCAGGGAC
ATCGTGGTGA CCGTCGGCAG GACCGGGGCC CTGACCCCGC AGGCGGTGCT CGAGCCGGTG
AACGTGGGCG GGGTCACCAT CTCGCGCGCC ACCCTGCACA ACGAGGACTA CATAAAGGAG
AAGGGCATCC TCATCGGCGA CACGGTCATC GTGGAGCGGG CGGGGGATGT GATCCCGCAG
GTCGTGAGGC CCGTCCCCGA GGAGCGGGAC GGCGACGAGG AGGAGTTCCG GATGCCGGAG
CGGTGCCCGG TCTGCGGGGA GAGGGTCTCC CGGCCCGAGG GGGAGGCCAT CACCCGCTGC
GCGAACGTCC GCTGCCCGGC GCAGGCGCTG GAGCACATCA TCCACTGGGC GAGCCGCGGG
GCCATGGACA TCGAGGGGCT GGGCGAGAAG CTCGCGAGGA AGCTCTTCGA CCTCGGCCTC
ATAAGGGACG TGGCGGACCT CTACGAGCTG CGGGCCGAGC AGCTCGCCCC CCTGGAGGGC
CTCGGCGAGA AGAGCGCGCA GAACCTGATC CGGGCGATAG AGCGGAGCAA GGAGCGGCCC
TTCGACCGGG TGCTGTTCGG GCTGGGGATC CGGCACGTCG GCTCGGCGAC GGCGGAGCTG
ATCGCCGAGC GGTTCTCCGG GGAGGAGCTG CTGCGCGGCG TGGGCGTCGA GGAGCTCACG
CAGATAGAGG GCGTCGGGGA GATCGTCGCC CGCGCGGTGG TGGAGTACTT CTCGCTGGAG
GAGAACCGGA AGCTGGTCCG CCGCCTGATG GAGCACGGCC TGAACTTCGG CCCGGTGCGC
GGCAAGCCGG AGGAGGGCCC GCTCTCCGGC AGGCGGCTGG TCATAACCGG CACCCTCTCC
CGGCCCCGGA GCGAGATCTC CGACCTCATA GAGGGGGCGG GCGGGACGGT GACCTCCTCG
GTGAGCCGCA ACACGGACTA CCTCGTCGCG GGCGAGAACC CGGGCTCGAA GCTGGAGCGG
GCCCGCGAGC TGGGCGTCCC GGTGCTCGAC GAGGAGGGCC TGAGGCGGCT GCTCTCCGGC
GAGGAGCGGC CCGGCTAG
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| Protein sequence | MGAPTLPRII PPVAEKLAEA RQRVEELREQ IRYHNRKYYV EDAPEISDAE YDALYRELEE
LESRFPELVT PDSPTQRVGG EPLEEFEEVR HAVPMLSLQN ARRVEELREW DARVRRLLGP
EEEGRLRYVT ELKIDGLAVS LRYENGRLVR GATRGNGFVG EDVTRQLRTI RSVPDRLDDD
PPGVLEPRGE VYIKLKDFEE FNRRRQERGE RPFANPRNLA AGSVRQLDPR VTARRPLTIY
LYGVGEGYEN FESHSEALAA LRRYGLRVNP HTVHGDIDSV IEECGRWAKK REALDFQVDG
VVVKVDSREQ QERLGAVQKA PRWAIAYKFE PLAGRTRLRD IVVTVGRTGA LTPQAVLEPV
NVGGVTISRA TLHNEDYIKE KGILIGDTVI VERAGDVIPQ VVRPVPEERD GDEEEFRMPE
RCPVCGERVS RPEGEAITRC ANVRCPAQAL EHIIHWASRG AMDIEGLGEK LARKLFDLGL
IRDVADLYEL RAEQLAPLEG LGEKSAQNLI RAIERSKERP FDRVLFGLGI RHVGSATAEL
IAERFSGEEL LRGVGVEELT QIEGVGEIVA RAVVEYFSLE ENRKLVRRLM EHGLNFGPVR
GKPEEGPLSG RRLVITGTLS RPRSEISDLI EGAGGTVTSS VSRNTDYLVA GENPGSKLER
ARELGVPVLD EEGLRRLLSG EERPG
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