Gene Rxyl_0314 details

Gene Information

• Locus tag: Rxyl_0314
• ID: 4114775
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rubrobacter xylanophilus DSM 9941
• Kingdom: Bacteria
• Replicon accession: NC_008148
• Strand: +
• Start bp: 331629
• End bp: 333569
• Gene Length: 1941 bp
• Protein Length: 646 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 638035103
• Product: alpha amylase, catalytic region
• Protein accession: YP_643102
• Protein GI: 108803165
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCCCAGAC CCAGACCCCC GATCATCATA GAGGACGTCT ACCCGGAGCT GGACTGCGGC 
CGCTACCCCA TCAAGCGGGA GGTCGGCGAC CGGCTGGAGG TGTGGGCCGA CATCTTCAAG 
GACGGGCACG ATGCCGTCTC GGCGGTCGTC CGGTACCGGG AGAGGGGGGC GCGCCGCTGG 
TCCGAGGTGC CCATGCGCCA CCACGAGAAC GACCGCTGGA CCGCGAGCTT CCCGCTCACC 
AGGAACACGC GCTACCAGTA CACCATCGAG GCCTGGCCGG ACGAGTTCGA GACCTGGCGC 
TCCGAGGTGG GGAAGAAGCT CGAGGCCGGG CAGCGGGTGG AGGTGGAGCT GCTGGAGGGG 
CGCGAGATCC TCGAGCGGGC CTACTCGCGC TCGAAGGACG GGCGCCTCCG GCAGACGCTC 
GACGCCTTCG ACGCCGCCGG GTACGAGGGG CGGCTCGCGC TGCTGCGCTC CGAGGAGGTG 
CGCGGGCTGA TGCGCGAGCA CCCCGACCGC TCGCTCGCGA CCGCCTACGG CAAGACCCTC 
GAGGTGGTGG TGGACCGGGT GCGGGCCCGC TACGGGGCCT GGTACGAGAT GTTCCCCCGC 
TCGCAGGGGA GCGTCCCGGG CAGGAGCGCC ACCTTCCGGG AGGCCGAGGG GCGGCTGGAC 
GAGCTCTCGT GGATGGGCTT CGACGTGGTG TACCTCACGC CCATCCACCC CATCGGGAAG 
ACCAACCGCA AGGGGCGCAA CAACGCCCTC GTGGCCGGGC CCGGCGACCC GGGCAGCCCC 
TACGCCATCG GGAGCGAGGA GGGCGGGCAC AAGGCCGTCC ACCCCGAGCT CGGGACGCTG 
GAGGACTTCC GGCGCTTCGT TGCGGCCGCC CGCGAGCGCG GGATGGAGGT CGCGCTCGAC 
CTCGCCCTGC AGTGCTCGCC CGACCACCCC TACCTCAGGG AGCACCCCGG GTGGTTCAGG 
CGGCGGCCCG ACGGCACCAT AAAGTACGCC GAGAACCCGC CCAAAAAGTA CGAGGACATC 
GTCAACGTGG ACTTCTACTG CGAGGAGTGG GAGGCTCTCT GGCGGGAGTG GCTGGAGGTC 
ATCCTGTTCT GGGTGGGGCA GGGCGTCAGG ATCTTCCGGG TGGACAACCC GCACACCAAG 
CCCTTCCCCT TCTGGGAGTG GGTGATAGGG GAGGTGCAGC GGGAGCACCC CGACGTCATC 
TTCCTCTCCG AGGCCTTCAC CCGGCCCAAG GTGATGCGCG CTCTGGCCAA GCTCGGCTTC 
ACCCAGTCCT ACACCTACTT CACCTGGCGC AACACCAAGC AGGAGCTCAC CGAGTACCTC 
ACCGAGCTCA CCATGGACTG GCCCAAGGAG TACATGCGCC CCAACTTCTT CGCCAACACC 
CACGACATCC TCCCGCACAT CCTGCAGTTC GGGGGGCGGC CCGCCTTCAT GATGCGGCTG 
GTGCTCGCGG CCACCCTCTC CCCCAGCTAC GGCATCTACA GCGGGTACGA GCTGTGCGAG 
AACACCCCGC GCGGGGAGCG GGGCACCACC GTCTACTACC AGGACTCCGA GGTCTACGAG 
TACAAGGTCT GGGACTGGGA CAGGCCCGGG AACATAAAGG GCTACATCCG GAGGGTGAAC 
GAGATCCGGC GCGAGAACCC CGCGCTGCAG GAGCTGACCA ACCTCTCCTT CCTCCCCGCC 
CCGGACGACA ACATCATCTT CTACGGCAAG AGGAGCGGGG AGAACGCCGT CTTCGTGGCG 
GTCAACCTGG ACCCGCACAA CCCCCACGAC ACCCACGTGC AGTTCCCGCT GTGGGAGCTC 
GGCATCGGGG AGGAGGAGCC CTACGTGGTC GAGGAGCTCA TCACCCGCCG CGAGATCCCG 
GCCCGCGGCA GCTGGTTCTG GGTGCGGCTC GACCCCCACC AGAACCCGGC CGAGATCTTC 
CGCCTCAGGA GGGCGGGATG A 

 

Protein sequence

MPRPRPPIII EDVYPELDCG RYPIKREVGD RLEVWADIFK DGHDAVSAVV RYRERGARRW 
SEVPMRHHEN DRWTASFPLT RNTRYQYTIE AWPDEFETWR SEVGKKLEAG QRVEVELLEG 
REILERAYSR SKDGRLRQTL DAFDAAGYEG RLALLRSEEV RGLMREHPDR SLATAYGKTL 
EVVVDRVRAR YGAWYEMFPR SQGSVPGRSA TFREAEGRLD ELSWMGFDVV YLTPIHPIGK 
TNRKGRNNAL VAGPGDPGSP YAIGSEEGGH KAVHPELGTL EDFRRFVAAA RERGMEVALD 
LALQCSPDHP YLREHPGWFR RRPDGTIKYA ENPPKKYEDI VNVDFYCEEW EALWREWLEV 
ILFWVGQGVR IFRVDNPHTK PFPFWEWVIG EVQREHPDVI FLSEAFTRPK VMRALAKLGF 
TQSYTYFTWR NTKQELTEYL TELTMDWPKE YMRPNFFANT HDILPHILQF GGRPAFMMRL 
VLAATLSPSY GIYSGYELCE NTPRGERGTT VYYQDSEVYE YKVWDWDRPG NIKGYIRRVN 
EIRRENPALQ ELTNLSFLPA PDDNIIFYGK RSGENAVFVA VNLDPHNPHD THVQFPLWEL 
GIGEEEPYVV EELITRREIP ARGSWFWVRL DPHQNPAEIF RLRRAG