| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_0166 |
|---|
| Symbol | |
|---|
| ID | 4117871 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 170396 |
|---|
| End bp | 171622 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 638034957 |
|---|
| Product | cysteine desulfurase |
|---|
| Protein accession | YP_642956 |
|---|
| Protein GI | 108803019 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0520] Selenocysteine lyase |
|---|
| TIGRFAM ID | [TIGR01976] cysteine desulfurase family protein, VC1184 subfamily
[TIGR01979] cysteine desulfurases, SufS subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACGACG TCCTCAAGGT GCGGCGCGAC TTTCCCATCC TCGAGCGGGA GGTGAACGGC
CGCCCGCTCG TCTACCTGGA CAACGCGGCG ACCTCCCAGA AGCCGCTGCA GGTCATCCGG
ACCCTCTCCC GGTACTACGA GCGGCACAAC GCCAACATCC ACCGCGGCGT CCACCGCCTG
GCCGAGGAGG CCACCGGGCT CTACGAGGAG GCGCGCGGCA AGGTGGCCCG CTTTATCGGG
GCTCCCGACC CCCGCGGCCT CGTCTTCACG CGGGGGACCA CCGAGTCCAT AAACCTCGTC
GCCCACGCCT GGGGCAGAAA GAACCTGCGC GAGGGCGACG AGGTGGTGCT CACCGAGGCC
GAGCACCACT CCAACCTGGT GCCCTGGCAG CTCGCCGCGC GGGACACCGG CGCGAGGCTT
CGCTTCATCC CGGTCCTGGA CGACGGCACG CTGGACATGG AGGCGGCGGA GCACCTGATC
GGGCCGCGGA CGCGGCTCGT GGGCTGCGTG CACGCCTCCA ACGTGCTCGG CACGGTCAAC
CCGGTGGAGC GGCTGGCGGA GCTGGCGCAC GAGGCGGGGG CCCTGATGCT GGTCGACGGG
GCGCAGAGCG CGCCGCACCT GCCGGTGGAC GTAACCTCTC TGGGCTGCGA CTTCTTCGCG
GCGAGCGGGC ACAAGATGCT CGGGCCGACC GGGGTGGGAT TCCTGTGGGC CCGCCCCGAG
CTTCTCGAGG AGATGGAGCC GTTCCTCGGC GGGGGCGAGA TGATCCGGGA GGTCCGCCTG
GAGCGTTCCA CCTGGAACGA GATCCCCTAC AAGTTCGAGG CCGGGACGAT GAACATCGCC
CAGGCGATCG GGCTGGGGGC CGCCGTGGAC TACCTGGGCT CCCTGGGGAT GGAGAGCGTC
CGGGAGCACG AGCGGCGCCT CGGGGCGTAC GCCTACCGCC GGCTCGCCGG GGTCGAGGGG
ATCACCCTCT ACGGCCCGGC GGAGAACCGG ACGGGGGTCG TGGCCTTCAA CCTCCCCGAG
GTGCACCCGC ACGACCTCTC CCAGCTCCTG GACCAGGAGG GCGTCGCCAT AAGGAGCGGC
CACCACTGCT GCCAGCCGCT GATGCGCCGC CTCGGGGTGG TGGCGACCGC CCGGGCCAGC
CTCTACCTGT ACAACACGGA GGAGGAGGTG GAGGCGCTGG TCGAGGCCAT CGCCCGCGCC
CGCGAGTTCT TCGAGGCGCC GGCATGA
|
|---|
| Protein sequence | MYDVLKVRRD FPILEREVNG RPLVYLDNAA TSQKPLQVIR TLSRYYERHN ANIHRGVHRL
AEEATGLYEE ARGKVARFIG APDPRGLVFT RGTTESINLV AHAWGRKNLR EGDEVVLTEA
EHHSNLVPWQ LAARDTGARL RFIPVLDDGT LDMEAAEHLI GPRTRLVGCV HASNVLGTVN
PVERLAELAH EAGALMLVDG AQSAPHLPVD VTSLGCDFFA ASGHKMLGPT GVGFLWARPE
LLEEMEPFLG GGEMIREVRL ERSTWNEIPY KFEAGTMNIA QAIGLGAAVD YLGSLGMESV
REHERRLGAY AYRRLAGVEG ITLYGPAENR TGVVAFNLPE VHPHDLSQLL DQEGVAIRSG
HHCCQPLMRR LGVVATARAS LYLYNTEEEV EALVEAIARA REFFEAPA
|
|---|
| |