| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmcs_4105 |
|---|
| Symbol | ispH |
|---|
| ID | 4112935 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium sp. MCS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008146 |
|---|
| Strand | - |
|---|
| Start bp | 4372956 |
|---|
| End bp | 4373957 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638033248 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|---|
| Protein accession | YP_641266 |
|---|
| Protein GI | 108801069 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCGA CGATCAACAT GGGGATTCCG GGTGCGTCCA GCTCGGTGAC GGGCGGTGTC
TCCGGTAAGC GAGTTCTGCT GGCCGAGCCG CGCGGATACT GCGCAGGGGT GGACCGCGCC
GTGGAGACCG TCGAGCGTGC GCTCGAGAAG CACGGCGCTC CGGTGTACGT GCGCCACGAG
ATCGTGCACA ACCGCTACGT CGTGGACACG CTCGCCAAGG CCGGCGCCGT GTTCGTGGAA
CAGACCGACG AGGTGCCCGA GGGCGCCATC GTCGTGTTTT CCGCCCACGG CGTGGCGCCG
ACCGTGCACG TCGAGGCGGC CGCGCGCAAC CTGAAGACCA TCGACGCCAC CTGCCCGCTG
GTGACGAAGG TGCACAACGA GGCCAAACGC TTCGCCCGCG ACGACTACGA CATCCTGCTC
GTCGGCCACG AAGGCCACGA GGAGGTCGTC GGCACCGCCG GTGAGGCGCC CGACCACGTT
CAGGTCGTCG ACAACCCCGA CGCGGTCGAC AAGGTCACCG TGCGCGACCC CGACAAGGTC
ATCTGGCTGT CCCAGACCAC CCTGAGCGTC GACGAGACCA TGGAGACGGT GCGCCGGCTG
CGGGAGAAGT TCCCGACGTT GCAGGACCCG CCCAGCGACG ACATCTGCTA CGCCACCCAG
AACCGCCAGG TCGCGGTCAA GGCGATGGCG CCGGAGTGCG AACTCGTCAT CGTCGTCGGC
TCGAAGAACT CGTCGAACTC GGTGCGGCTG GTCGAGGTGG CCCTCGGCGC CGGATCCGAC
GCGGCACATC TGGTCGACTA CGCCGAGGAC ATCGATCCGA CCTGGCTCAA CGGTGTCACC
ACGGTCGGCG TGACCTCGGG CGCGTCGGTG CCGGAGGTCC TGGTGCGCGG TGTGCTCGAC
CGGCTCGCCG AATACGGGTA CGGAACCGTG CAGCCGGTGA CGACCGCCAA CGAGACACTG
GTGTTCGCGC TGCCCAGGGA GATCCGGCCC GCTCGCAGCT GA
|
|---|
| Protein sequence | MPPTINMGIP GASSSVTGGV SGKRVLLAEP RGYCAGVDRA VETVERALEK HGAPVYVRHE
IVHNRYVVDT LAKAGAVFVE QTDEVPEGAI VVFSAHGVAP TVHVEAAARN LKTIDATCPL
VTKVHNEAKR FARDDYDILL VGHEGHEEVV GTAGEAPDHV QVVDNPDAVD KVTVRDPDKV
IWLSQTTLSV DETMETVRRL REKFPTLQDP PSDDICYATQ NRQVAVKAMA PECELVIVVG
SKNSSNSVRL VEVALGAGSD AAHLVDYAED IDPTWLNGVT TVGVTSGASV PEVLVRGVLD
RLAEYGYGTV QPVTTANETL VFALPREIRP ARS
|
|---|
| |