| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmcs_3258 |
|---|
| Symbol | murD |
|---|
| ID | 4112090 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium sp. MCS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008146 |
|---|
| Strand | - |
|---|
| Start bp | 3453269 |
|---|
| End bp | 3454756 |
|---|
| Gene Length | 1488 bp |
|---|
| Protein Length | 495 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 638032390 |
|---|
| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
|---|
| Protein accession | YP_640421 |
|---|
| Protein GI | 108800224 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
|---|
| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.494616 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCCCGCG CAGTCGTCGA ACCGCTGACC CCGGGCGTCC GGGTGCTGAT CACCGGCGCC
GGGCTGACCG GGCGGTCGGT CAGCGCGGTG CTCGAGCCGA CCGGTGTGCG GTTGACCATC
TGCGACGACG ACCCGCTGGC GCTGCAGCGG CTGATCACCC CCGCCGCGGT CGTCACCACC
GGTGAGGCGG TGGCCGGGAT CGCCGACTAC GCCCTTGTCG TCACCAGCCC CGGATTCCCC
CCGACCGCAC CGGTGCTGGC CGCGGCCGCG GCCGCCGGGG TGCCGATCTG GGGTGACGTG
GAGCTGGCGT GGCGGCTGGA CCGGGCGGGC TGGTTCGGGC CGCCGCGGCG TTGGCTGGTG
GTCACCGGCA CCAACGGCAA GACGACCACC ACCTCGATGC TCTACGCGAT CCTGCGCGCC
GCGGACCGCC GGGCGATGCT GTGCGGCAAC ATCGGCAACC CTGTCCTCGA CGTGCTCGGT
GAGTCACCGC GGACGCGAGG AGATGAGGAA CCCGAACTGC TGGCGGTCGA GCTCTCGAGC
TTCCAGCTCC ATTGGGCGCC GTCGCTGCGC CCGGACGCGG GTGTGGTGCT CAACGTCGCC
GAGGACCATC TGGACTGGCA CGGGTCGATG ACGGCCTACG CCCGCGACAA GGCCAGGGCG
CTCGACGGCC GGGTGGCCGT GGCAGGTCTC GACGACCCGG TGGCGGCCGA GCTGCTCACG
ACCGCCGCGG CGCCGGTGCG GGTGGGCTTC CGGCTGGGTC CGCCGGGGGC CGGTGAACTG
GGCGTCCACG ACGGGTGGCT GGTCGACAAC GCGTTCGCCG ACGGCCTTCG GCTGGCGCGC
GCCGACGACA TCCGGGTGGC CGGACCGGTC GGGGTGCTCA ACGCGCTGGC GGCGGCCGCG
CTTGCCCGCG CGGTCGACGT ACCGGCCGAG GCGGTGGCCG CGGCGCTGGC CTCGTTCGAG
GTGGGCCGGC ACCGCGCCGA AGTGGTCGCG GTCTCCGGCG GCGTCACCTG GGTCGACGAC
TCGAAGGCCA CCAATCCGCA TGCCGCCCGC GCCTCGATCG CGGCGTATCC GCGGGTGGTG
TGGATCGCCG GCGGACTGCT CAAGGGCGTG TCGGTCGACG CGCTCGTCGC CGAGGTCGCC
GACCGGCTCG CCGGGGTGGT GTTGATCGGC CGCGACCGTG CGGTGGTCGC CGAGGCGTTA
TCGCGACACG CGCCGGATGT CCCCGTCGTC GAGCTTGTGA CGGGGGAGGA TTCTGGGGTG
CATGGGACAA CTGAGTCAGC TGTGAATCAT GTGACTCGTG TGATCGACAC GGGAGGGCGG
CCGCTACCCG ATGCGGTGAT GCGGGCGGCG GTCGACGCCG CGCGCCACCT CGCCCGCCCC
GGTGACGCTG TGCTGCTGGC GCCCGCAGGC GCCTCATTCG ACCAGTTCAG CGGCTACACC
CAGCGCGGCG ACGCCTTCGC CGCCGCGGTG CGCGCCGATC TCGGGTAG
|
|---|
| Protein sequence | MARAVVEPLT PGVRVLITGA GLTGRSVSAV LEPTGVRLTI CDDDPLALQR LITPAAVVTT
GEAVAGIADY ALVVTSPGFP PTAPVLAAAA AAGVPIWGDV ELAWRLDRAG WFGPPRRWLV
VTGTNGKTTT TSMLYAILRA ADRRAMLCGN IGNPVLDVLG ESPRTRGDEE PELLAVELSS
FQLHWAPSLR PDAGVVLNVA EDHLDWHGSM TAYARDKARA LDGRVAVAGL DDPVAAELLT
TAAAPVRVGF RLGPPGAGEL GVHDGWLVDN AFADGLRLAR ADDIRVAGPV GVLNALAAAA
LARAVDVPAE AVAAALASFE VGRHRAEVVA VSGGVTWVDD SKATNPHAAR ASIAAYPRVV
WIAGGLLKGV SVDALVAEVA DRLAGVVLIG RDRAVVAEAL SRHAPDVPVV ELVTGEDSGV
HGTTESAVNH VTRVIDTGGR PLPDAVMRAA VDAARHLARP GDAVLLAPAG ASFDQFSGYT
QRGDAFAAAV RADLG
|
|---|
| |