| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmcs_2208 |
|---|
| Symbol | |
|---|
| ID | 4111041 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium sp. MCS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008146 |
|---|
| Strand | + |
|---|
| Start bp | 2345441 |
|---|
| End bp | 2347357 |
|---|
| Gene Length | 1917 bp |
|---|
| Protein Length | 638 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638031329 |
|---|
| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| Protein accession | YP_639372 |
|---|
| Protein GI | 108799175 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
|---|
| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGAAC AGATCCGCGG TCCCGCCGAT CTGCAGCACC TTTCGCAGTC TGCGCTCAGC
GAATTGGCCG GGGAGATTCG CCAGTTCCTC ATCCACAAGG TTGCTGCCAC CGGCGGGCAT
CTGGGCCCGA ACCTCGGCGT CGTCGAGCTG ACGCTCGCCC TGCACCGGGT TTTCGACTCG
CCGCACGATC CGCTCATCTT CGACACGGGT CATCAGGCCT ATGTGCACAA GATGCTCACC
GGGCGCTCCC ACGAGTTCGA CTCGCTGCGC AAGAAGGACG GCCTGTCGGG CTACCCGTCG
CGCAGTGAGA GCGAGCACGA CTGGGTGGAG TCCAGCCACG CCAGCGCCGC ACTGTCCTAC
GCCGACGGGC TGGCCAAGGC CTTCGAGCTG ACCGGGCACC GCAACCGTCA TGTGGTCGCC
GTCGTCGGCG ACGGCGCGCT GACCGGCGGC ATGTGCTGGG AGGCGCTCAA CAACATCGCG
GCCGCCCGCA GGCCCGTGGT GATCGTCGTC AACGACAACG GACGCAGCTA CGCGCCCACC
ATCGGCGGGT TCGCCGACCA CCTGGCCGCG CTGCGCCTGC AGCCCGGATA CGAACGGGTG
CTCGAGGAGG GCCGCAAGGC GGTACGCGGA CTGCCGGTGA TCGGCGAGTT CTGCTACCAG
TGCATGCACA GCGTCAAGGC GGGCATCAAG GACGCCCTGT CGCCGCAGGT GATGTTCACC
GATCTCGGGC TCAAGTACGT CGGTCCCATC GACGGCCACG ACGAGCACGC CGTCGAGTCC
GCACTGCGCC ACGCCCGCGG CTTCAACGCC CCGGTGATCG TGCACGTCGT CACCCGCAAG
GGCATGGGCT ATGCCCCGGC CGAGAACGAC GAGGCCGAAC AGATGCATGC GTGCGGCGTC
ATCGACGTCG CGACCGGCCG CGCCACGAAG GTGGCCGCAC CGGGGTGGAC GTCCTCGTTC
TCCGAGGCGC TCATCGACTA CGGCGCCAAG CGGCGCGACA TCGTCGCGAT CACCGCGGCC
ATGCCAGGCC CCACCGGCCT CAGCGCTTTC CGTGACCGGT TCCCGGACCG CTTCTTCGAC
GTCGGCATCG CCGAACAGCA TGCGATGACG TCCGCGGCGG GCCTGGCCAT GGGCGGCCTG
CATCCCGTGG TGGCCATCTA CTCGACGTTC CTCAACCGCG CGTTCGACCA GCTGATGATG
GACGTCGCGC TGCACAAACT GCCCGTCACG CTGGTGCTGG ACCGCTCCGG TGTCACCGGT
CCGGACGGCG CCAGCCACAA CGGCATGTGG GATCTGTCCG TGTTGGGCAT CGTGCCGGGG
ATGCGGGTGG CCGCACCTCG CGACGGCGCA CGACTGCGCG AGGAACTCGG CGAGGCGCTC
GACGTCAATG ACGCCCCCAC CGCCATCAGG TTTCCCAAAG GTGATGTGGG CGAAGACATC
CCGGCGGTGC GACGGCACCG CGGGGTCGAC GTGCTGGCCG AGCCGGCCGA CGGCCTGTCC
GACGATGTGC TGCTCGTGGC GGTCGGTCCG TTCGCCTCGA TGGCGCTCAC CGTCGCCGAA
CGCCTGCGCA AACAGGGCAT CGGTGTCACC GTCGTCGACC CGCGCTGGGT GCTGCCGGTG
CCCGAGGTGC TCACCGAGTT CGCCGCCGCC CACAAGCTGG TGGTCACCGT CGAGGACAAC
GGTCTGCACG GCGGGATCGG CTCGTCGGTG TCGGCGGCGC TGCGTCACGC CGAGGTCGAC
GTGCCGTGCC GCGACGTCGG GCTGCCGCAG CAGTTCTTCG ACCACGCCTC GCGTGGTGAG
GTGCTCGCCG ACGTCGGCGT GACCGACCGC AACATCTCCC GGCAGATCAC CGGGTGGGTG
GCGGCCCTGG GCGCGACGCC GGCGGACGCC GACGAGGTCA GCGAGCGACT GGACTGA
|
|---|
| Protein sequence | MLEQIRGPAD LQHLSQSALS ELAGEIRQFL IHKVAATGGH LGPNLGVVEL TLALHRVFDS
PHDPLIFDTG HQAYVHKMLT GRSHEFDSLR KKDGLSGYPS RSESEHDWVE SSHASAALSY
ADGLAKAFEL TGHRNRHVVA VVGDGALTGG MCWEALNNIA AARRPVVIVV NDNGRSYAPT
IGGFADHLAA LRLQPGYERV LEEGRKAVRG LPVIGEFCYQ CMHSVKAGIK DALSPQVMFT
DLGLKYVGPI DGHDEHAVES ALRHARGFNA PVIVHVVTRK GMGYAPAEND EAEQMHACGV
IDVATGRATK VAAPGWTSSF SEALIDYGAK RRDIVAITAA MPGPTGLSAF RDRFPDRFFD
VGIAEQHAMT SAAGLAMGGL HPVVAIYSTF LNRAFDQLMM DVALHKLPVT LVLDRSGVTG
PDGASHNGMW DLSVLGIVPG MRVAAPRDGA RLREELGEAL DVNDAPTAIR FPKGDVGEDI
PAVRRHRGVD VLAEPADGLS DDVLLVAVGP FASMALTVAE RLRKQGIGVT VVDPRWVLPV
PEVLTEFAAA HKLVVTVEDN GLHGGIGSSV SAALRHAEVD VPCRDVGLPQ QFFDHASRGE
VLADVGVTDR NISRQITGWV AALGATPADA DEVSERLD
|
|---|
| |