Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmcs_2185 |
Symbol | |
ID | 4111018 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Mycobacterium sp. MCS |
Kingdom | Bacteria |
Replicon accession | NC_008146 |
Strand | - |
Start bp | 2324944 |
End bp | 2326386 |
Gene Length | 1443 bp |
Protein Length | 480 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 638031306 |
Product | RNA polymerase sigma factor |
Protein accession | YP_639349 |
Protein GI | 108799152 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGCAGCGA CAAAGGCAAA CCCGGCAACC GAAGAGCCGG TGAAGCGCAC CGCTACCAAG ACCCCCGCGA AGAAGACCGC CGCGGCGAAG GCCCCAGCCA AACGCGCGGC CAAGGGTACG ACGACGACCC GCGGCCCGGC CAAGAAGGAC GGCGCCGCCC CGCGCGGTCG TGGCAAGAAG TCCACCGCAC CCGAGGCCGG TGCCGCCGAC GCCCTCGCCG ACGACGACCT CGACACCGAC GACACCCTCG AGGCCGAACC GGATATCGAC GTCGACGACG CCGACCTGGA CCTCGAGGAT CTCGACACCG ACGACGACTC GTCCGACGAC GGCGACGACG CCGACACCCC CGACGCCAAG GCCAAGGCCG CCCCCAAGGG CGGCGCGGTG CCCGCCGCCC CCGCCACCGA GGACGAGGAG ATCGCCGAGC CCTCCGAGAA GGACAAGGCC TCCGGCGACT TCGTCTGGGA CGAGGAGGAG TCCGAGGCGC TGCGGCAGGC CCGCAAGGAC GCCGAGCTCA CCGCCTCCGC CGACTCGGTG CGCGCGTATC TCAAGCAGAT CGGCAAGGTG GCGCTGCTCA ACGCCGAGGA GGAAGTCGAG CTCGCCAAGC GCATCGAGGC CGGTCTGTTC GCCACCCAGA AGCTGGCCGA ACTCGCCGAA AAGGGTGAGA AGCTGCCGGT GCAGCAGCGC CGCGACATGC AGTGGATCTG CCGCGACGGC GACCGCGCCA AGAACCACCT GCTGGAGGCG AACCTCCGCC TGGTGGTGTC GCTGGCCAAG CGCTACACCG GCCGTGGCAT GGCGTTTCTG GACCTCATCC AGGAGGGCAA CCTCGGTCTG ATCCGCGCGG TCGAGAAGTT CGACTACACC AAGGGTTACA AGTTCTCCAC CTACGCCACC TGGTGGATCC GGCAGGCGAT CACCCGCGCG ATGGCCGACC AGGCGCGCAC CATCCGCATC CCGGTGCACA TGGTCGAGGT CATCAACAAG CTGGGCCGCA TCCAGCGCGA GCTGCTCCAG GACCTGGGTC GCGAACCCAC GCCCGAAGAG CTCGCCAAGG AGATGGACAT CACGCCGGAG AAGGTGCTGG AGATCCAGCA GTACGCGCGT GAGCCGATCT CGCTGGACCA GACGATCGGC GACGAGGGCG ACAGCCAGCT CGGCGACTTC ATCGAGGACT CCGAGGCCGT GGTGGCCGTG GACGCGGTCT CGTTCACGCT GCTGCAGGAT CAGCTGCAGT CGGTGCTGGA GACGCTGTCG GAGCGCGAGG CCGGCGTGGT ACGGCTGCGG TTCGGCCTCA CCGACGGCCA GCCGCGCACG CTCGACGAGA TCGGCCAGGT CTACGGCGTC ACGCGGGAAC GCATCCGCCA GATCGAGTCG AAGACGATGA GCAAGCTCCG GCACCCCAGC CGGTCGCAGG TGCTGCGCGA CTACCTCGAC TGA
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Protein sequence | MAATKANPAT EEPVKRTATK TPAKKTAAAK APAKRAAKGT TTTRGPAKKD GAAPRGRGKK STAPEAGAAD ALADDDLDTD DTLEAEPDID VDDADLDLED LDTDDDSSDD GDDADTPDAK AKAAPKGGAV PAAPATEDEE IAEPSEKDKA SGDFVWDEEE SEALRQARKD AELTASADSV RAYLKQIGKV ALLNAEEEVE LAKRIEAGLF ATQKLAELAE KGEKLPVQQR RDMQWICRDG DRAKNHLLEA NLRLVVSLAK RYTGRGMAFL DLIQEGNLGL IRAVEKFDYT KGYKFSTYAT WWIRQAITRA MADQARTIRI PVHMVEVINK LGRIQRELLQ DLGREPTPEE LAKEMDITPE KVLEIQQYAR EPISLDQTIG DEGDSQLGDF IEDSEAVVAV DAVSFTLLQD QLQSVLETLS EREAGVVRLR FGLTDGQPRT LDEIGQVYGV TRERIRQIES KTMSKLRHPS RSQVLRDYLD
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