| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmcs_1516 |
|---|
| Symbol | |
|---|
| ID | 4110352 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium sp. MCS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008146 |
|---|
| Strand | - |
|---|
| Start bp | 1649423 |
|---|
| End bp | 1651573 |
|---|
| Gene Length | 2151 bp |
|---|
| Protein Length | 716 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638030637 |
|---|
| Product | 3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein |
|---|
| Protein accession | YP_638683 |
|---|
| Protein GI | 108798486 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0636546 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACAG AGAACACCAT TGCGTGGGAT GAGGATGCCG ACGGCATCGT CACGCTGACA
CTCGACGACC CGACCGGTTC GGCCAACGTG ATGAACGACC ATTACCGCGA GTCGATGCAC
AACGCGGTGA ATCGGCTGGA GGCCGAGAAG GATTCGGTCA CCGGTGTGGT GCTGGCGAGT
GCGAAGAAGA CCTTCTTCGC CGGCGGCGAC CTCAAGGGCC TGATCAAGCT CGGACCCGAA
GACGCGGCCG AGGCGTTCGA TCTCGCCGAG TCCACCAAGG CCGATCTGCG CCGGCTGGAG
ACCCTCGGAA TCCCGGTGGT CGCCGCGATC AACGGTGCCG CCCTCGGAGG CGGGCTGGAG
ATCGCGCTGG CCACCCATCA CCGCATCGCC GCCGATGTGC GCGGTGTGGT GATCGGCCTG
CCCGAGGTCA CCCTGGGCCT GCTGCCCGGC GGTGGCGGCG TCGCCCGCAC CGTGCGCATG
TTCGGTGTGC AGAAGGCCTT CGCCGAGATC CTGTCCACCG GAGCGCGGTT CAGCCCCCCC
AAGGCCCTCG ACATCGGTCT GGTGGATCAG CTCGTCCAGT CCGTCGACGA GCTCATCCCC
GCCGCGAAGA AGTGGATCAA GGAGAACCCC GAGGCCGGCG TGCAACCCTG GGATGCCAAG
GGCTACAAGT TGCCCGGTGG CACCCCCGCC TCGCCGGGGC TGGCGGCCAT CCTGCCGTCC
TTCCCCGCGA CGTTGAAGAA ACAGCTCAAG GGCGCGCCGG TCCCCGCACC GCGGGCCATC
CTGGACGCCG CCGTCGAGGG TGCGCAGGTC GACTTCGACA CCGCATCGCG CATCGAGAGC
CGCTACTTCG TGAAGCTGGT CACCGGCCAG ACCGCGAAGA ACATGATCCA GGCGTTCTTC
CTCGATCAGC AGTCCATCAG CGGCGGCGCC TCCCGCCCGG AGGGCATCGG CACGACCCCG
ATCACCAAGA TCGGCGTGCT GGGCGCGGGC ATGATGGGCG CCGGTATCGC CTACGTGTCG
GCCAAGGCCG GCTACGACGT CGTGCTCAAG GACGTCACGA TCGAGGCTGC GCAGAAGGGC
AAGGCCTACT CGGAGAAGAT CGAGGCCAAG GCCGTCAGCC GCGGGCAGAC CACCGAAGAG
AAGTCCGCCG CGTTGCTTTC CAAGATCACC CCGACCGCCG ACGCGGCCGA CCTCGCCGGT
GTCGACTTCG TCATCGAGGC GGTCTTCGAG GACCAGGAAC TCAAGCACAA GGTGTTCGGC
GAGATCGAGG ACATCGTCGA GCCCAACGCC ATCCTCGGCT CCAACACCTC CACGCTGCCG
ATCACCGGTC TGGCCGCCGG CGTGAAGCGT CAGGAGGACT TCATCGGCAT CCACTTCTTC
TCCCCCGTGG ACAAGATGCC GCTGGTGGAG ATCATCAAGG GCGAGAAGAC CTCCGACGAG
GCGCTGGCCC GCGTGTTCGA CTACACGCAG GCGATCAAGA AGACCCCGAT CGTGGTCAAC
GACAGCCGCG GCTTCTTCAC GAGCCGCGTG ATCCGGACCT TCGTCAACGA GGCCATGGCG
ATGCTGGGCG AAGGTATCGC CCCCACCACC ATCGAGCAGG CCGGCGGCCA GGCGGGCTAC
CCGGCACCTC CGCTGCAGCT TCTCGATGAG CTGAACCTGG AACTGCTGCA GAAGATCTCG
ATCGCCTCCG AGGCCGCGGC CAAGGATGAG GGAACCACCT ACGTCGCGCA CCCGGGTGAA
CTCGTGGTCG AGAAGATGAT CGAACTCGGC CGGCCGTCGC GCCTGAAGGG CGCGGGCTTC
TACTCCTACG TCGACGGCAA GCGCGCCGGG TTGTGGCCGG GCCTGAAGGA GACCTTCAAC
TCAGGCTCGA CGGAGATCCC GCTGCAGGAT GCCATCGACC GCCTGCTGTT CTCCGAAGCC
CTGGAAACGC AGAAATGCTT CGACGAGGGC GTGCTGAAAA CCAGCGCCGA CGCCAACGTC
GGATCCATCC TGGGCATCGG CTACCCGGCC TGGACCGGTG GTTCCGCGCA GTACATCGTG
GGTTACGAGG GCCCTCACGG CATCGGCAAG GCCGCGTTCG TGGCCCGGGC CAAGGAACTG
GCCGCCCGCT ACGGCGACCG CTTCAATCCA CCCGCCTCGC TGGAAAGCTA G
|
|---|
| Protein sequence | MSTENTIAWD EDADGIVTLT LDDPTGSANV MNDHYRESMH NAVNRLEAEK DSVTGVVLAS
AKKTFFAGGD LKGLIKLGPE DAAEAFDLAE STKADLRRLE TLGIPVVAAI NGAALGGGLE
IALATHHRIA ADVRGVVIGL PEVTLGLLPG GGGVARTVRM FGVQKAFAEI LSTGARFSPP
KALDIGLVDQ LVQSVDELIP AAKKWIKENP EAGVQPWDAK GYKLPGGTPA SPGLAAILPS
FPATLKKQLK GAPVPAPRAI LDAAVEGAQV DFDTASRIES RYFVKLVTGQ TAKNMIQAFF
LDQQSISGGA SRPEGIGTTP ITKIGVLGAG MMGAGIAYVS AKAGYDVVLK DVTIEAAQKG
KAYSEKIEAK AVSRGQTTEE KSAALLSKIT PTADAADLAG VDFVIEAVFE DQELKHKVFG
EIEDIVEPNA ILGSNTSTLP ITGLAAGVKR QEDFIGIHFF SPVDKMPLVE IIKGEKTSDE
ALARVFDYTQ AIKKTPIVVN DSRGFFTSRV IRTFVNEAMA MLGEGIAPTT IEQAGGQAGY
PAPPLQLLDE LNLELLQKIS IASEAAAKDE GTTYVAHPGE LVVEKMIELG RPSRLKGAGF
YSYVDGKRAG LWPGLKETFN SGSTEIPLQD AIDRLLFSEA LETQKCFDEG VLKTSADANV
GSILGIGYPA WTGGSAQYIV GYEGPHGIGK AAFVARAKEL AARYGDRFNP PASLES
|
|---|
| |