| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmcs_0171 |
|---|
| Symbol | |
|---|
| ID | 4109017 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium sp. MCS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008146 |
|---|
| Strand | - |
|---|
| Start bp | 186760 |
|---|
| End bp | 190041 |
|---|
| Gene Length | 3282 bp |
|---|
| Protein Length | 1093 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638029296 |
|---|
| Product | RND superfamily drug efflux protein |
|---|
| Protein accession | YP_637348 |
|---|
| Protein GI | 108797151 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2409] Predicted drug exporters of the RND superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.188694 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTCGCCT GGTGGGGTCG AAACGTATAC CGATATCGGT ACATCGTGAT CGGTGTCATG
GTGGCGCTGT GCATCGGTGG CGGCATCTAC GGGATCAGTC TCGGTAACAA CGTCACGCAG
AGCGGTTTCT ACGACGAGGG AAGCCAGTCG GTGCAGGCGT CGGTCGCCGG CGATGAGGTC
TACGGCCGCG ACCGCACGAG CCACGTCGTC GCGATCCTGA CCCCGCCCGA CGGCGAGAAG
GTCGACAACC CGGAGTGGCA GCGCGAGGTC GTCGGTGAGC TCGACGCTCT CGTCAAGGAC
CATCCGGACC AGGTGGTGAG CTGGGTCGGC TGGCTACGGG CGCCCGACGC CGCCAGCGCC
ACCGTGCAAC AGATGAAGAC CGAGGATCTG TCCAAGACCT TCGTCAGCGT CCCGCTCAAA
GGCGACACCG ACGACGAGAT CCTGAAGAAC TACCAGGTCA TCGAACCCGA CCTGCAGGAG
ATCAACGACG GCAACATCCA GCTGGCCGGC CTCAACCCGC TGGCCAGCGA ACTCACGGGC
AGCATCGGTG AAGACCAGAA GCGGGCCGAG GTCGCCGCCA TCCCGCTGGT CTGCGTTGTG
CTGTTCTTCG TTTTCGGCGG CGTGATCGCC GCGGCACTGC CCGGCCTCAT CGGCGGTCTC
ACCATCGCGG GCGCGCTGGG CATCATGCGC CTGCTCGCCG AGATCATGCC CGTGCACTTC
TTCGCCCAGC CGGTGGTGAC GCTCATGGGC CTGGGCATCG CCGTCGACTA CGGCTTGTTC
ATGGTCAGCC GGTTCCGAGA AGAACTCGCC GAGGGCTACG ACACCGAGGC GGCGGTACGC
CGCACGGTGA TGACCTCCGG CCGCACGATC ATGTTCTCCG CGGTCATCCT GGTCGCCTCG
TCCGTCCCGC TGCTGTTGTT CCCGCAGGGC TTCCTGAAGT CGATCACCTA CGCGATCATC
GCCTCGGTCA TGCTGGCGGC AGTCCTGTCG ATCACCGTCC TCGCCGCGGC ACTGGCGATT
CTCGGCCCCA GGGTCGATGC GCTCGGCGTC AAGACACTCA TCAAGTTCGC CGAACCCGAT
CCGATCTCCT CCGACCCGGC GGTCCAGAAG ACCAACACGT TCGCCATCGC CTCGATCCCG
CTGGGGCTGC TGGTGCCGCC GGTGGGCATC GCGCTAGGCC ACATCGCCCG CAAGCGCATC
AAGCAGACGG GTGAGCAGGG CGCCAACCTG GCCCTGATCG GACTGGTCCT CGGCTACACC
GTGCTGTACG GCGCCATGGC CTACGGCGTC ATCGCGTTGA AGGACAACGG CACCATCGGC
AGCGGCGTCT ACTGGATGTT GCTCGGAATC GTGGCCTTCC TCGTCATCGT CACCTTCGGC
CTCACCCTGG CGCGGTATGT GCCGTTGGCG CGTCGCCCCA TCGTGTGGTG GCTGCACTGG
TTGGCGGAGA AGACCCAGAA GACAAAGACC CGCGCCGAGG TCGAGCAGGG GTTCTGGGGC
AAATTGGTCA CCCACGTGAT GAAGCGCCCC GGCACGTTCG CCTTCCCGAT CATCGTCGTG
ATGATCCTGC TGATCATCCC GCTGGGCCAG TTGTCTCTCG GCGGCATCAG CGAGAAGTAC
CTGCCGCCGG ACAACTCCGT CCGGCAGGCG CAGGAGGACT TCGACCGCAG CTTCCCCGGT
TTCCGCACCG AACCGCTGAC GATCGTGCTC AAGAGCGACA ACGGTGACCC GGTCACCGAT
CAGCAGGTGG CCGACATCCG CGCCAAGGCG ATGTCGATCA GCGGCTTCAT CGATCCCGAC
AACGACCCGT CGAAGATGTG GCAGGAGCGG TCGGTCCAGG AAGGCGGCTC CGAGGATCCG
TCGGTGCGGG TGATCCAGAA CGGTCTGGAG AACCGCAACG ACGCCGCGAC CAAGATCGAA
GAGTTGCGAG CGTTGTCCCC ACCGCGCGGA GTCTCCGTGT GGGTCGGCGG TACGCCGGCG
CTCGAGCAGG ACAGTATCCA CAGCCTGTTC GACCGGCTGC CGTTGATGGT CACGATCCTG
ATCGTCACGA CGACGATCCT GATGTTCCTG GCGTTCGGGT CGCTCGTCCT GCCGATCAAG
GCCGCGTTGA TGAGTGCCCT GACGTTGGGT TCGACGATGG GCATCCTGAC GTGGATGTTC
GTCGACGGGC ACGGGTCCGG GCTGATGAAC TACACGCCGC AGCCCCTGAT GGCGCCGATG
ATCGGCCTGA TCATCGCGGT CATCTGGGGT CTGTCCACCG ACTACGAGGT CTTCCTCGTC
TCCCGAATGG TGGAGGCGCG CGCCCGCGGG CTGTCCACGG CGGAGGCCAT CCGGGTGGGC
ACGGCCACCA CGGGACGGTT GATCACCGGT GCCGCGCTGG TGCTGGCCGT CGTCGCAGGC
GCGTTCGTGT TCTCCGATCT GGTGATGATG AAGTACCTCG CGTTCGGCCT GCTGCTCGCG
CTGTTGCTGG ACGCGACGAT CATCCGGATG TTCCTGGTGC CGGCGATCAT GAAGATGCTC
GGCGACGACT GCTGGTGGGC GCCGCGCTGG ATGAAGCGTC TGCAGGAGCG CCTCGGCCTC
GGCGAGGTCG AACTGCCGGA CGAGCGCAAA CGTCCGTTGG TGCGCGATCC CTCAGAAGAC
CAGGCGCTGG TCGGCGCGGG CGCTCCGGTA CCGCCGCGGC CGCGGCCGCC GCACGATCCG
ACGCACCCCG GTGTCGAGGG TCGCGTCGGA CCCACCCGTA TCCCTCCGGG CCCACCCCGG
CTGAACGGTC CGTCGGTCGC CGGCACGAGC CGGATCCCGA CCAACCGGCC CGCCCCCGGG
CACGAGCCTC CGACGACGCG GTTGTCGATG GCGAAGAACG CGGTGCGCGG TGCGGTCAAC
ACCGCGACCA CTCCGCGGGC TCCGCGGCCG ACCGGCCCCG CACCCAAGCG CGAGGAACGC
GAGATCGAGT CCTGGCTCGG TGAACTGCGT GGCGGCCCCG CTGGTCCCGG CGGCGGCCAA
CCGCCCCGGC CGCCGCAGCC GTCGGCCGAA CCGACGACGG CCATGCGGGC CGGTGCGCCG
AGGCCCGAAC CCGAGCCCGA AGGCAACGAG CCGACGACGG CGATCCCGGT GCAGCGCCCG
CCGCAGCCCG AGGAGAGCGA CGCCACGACG AAGATCCCGA CCCAACAGGA TGCCGGGACC
GATTCTGCGT CGACGGAGAA GCTCAACGCC CCTGAGGAGC AGAAGCGCCG CGGCGGTGGG
ATGAGCGCAG CGGAGCTGCT GCGCCGCGAA GGCCGGATGT AG
|
|---|
| Protein sequence | MFAWWGRNVY RYRYIVIGVM VALCIGGGIY GISLGNNVTQ SGFYDEGSQS VQASVAGDEV
YGRDRTSHVV AILTPPDGEK VDNPEWQREV VGELDALVKD HPDQVVSWVG WLRAPDAASA
TVQQMKTEDL SKTFVSVPLK GDTDDEILKN YQVIEPDLQE INDGNIQLAG LNPLASELTG
SIGEDQKRAE VAAIPLVCVV LFFVFGGVIA AALPGLIGGL TIAGALGIMR LLAEIMPVHF
FAQPVVTLMG LGIAVDYGLF MVSRFREELA EGYDTEAAVR RTVMTSGRTI MFSAVILVAS
SVPLLLFPQG FLKSITYAII ASVMLAAVLS ITVLAAALAI LGPRVDALGV KTLIKFAEPD
PISSDPAVQK TNTFAIASIP LGLLVPPVGI ALGHIARKRI KQTGEQGANL ALIGLVLGYT
VLYGAMAYGV IALKDNGTIG SGVYWMLLGI VAFLVIVTFG LTLARYVPLA RRPIVWWLHW
LAEKTQKTKT RAEVEQGFWG KLVTHVMKRP GTFAFPIIVV MILLIIPLGQ LSLGGISEKY
LPPDNSVRQA QEDFDRSFPG FRTEPLTIVL KSDNGDPVTD QQVADIRAKA MSISGFIDPD
NDPSKMWQER SVQEGGSEDP SVRVIQNGLE NRNDAATKIE ELRALSPPRG VSVWVGGTPA
LEQDSIHSLF DRLPLMVTIL IVTTTILMFL AFGSLVLPIK AALMSALTLG STMGILTWMF
VDGHGSGLMN YTPQPLMAPM IGLIIAVIWG LSTDYEVFLV SRMVEARARG LSTAEAIRVG
TATTGRLITG AALVLAVVAG AFVFSDLVMM KYLAFGLLLA LLLDATIIRM FLVPAIMKML
GDDCWWAPRW MKRLQERLGL GEVELPDERK RPLVRDPSED QALVGAGAPV PPRPRPPHDP
THPGVEGRVG PTRIPPGPPR LNGPSVAGTS RIPTNRPAPG HEPPTTRLSM AKNAVRGAVN
TATTPRAPRP TGPAPKREER EIESWLGELR GGPAGPGGGQ PPRPPQPSAE PTTAMRAGAP
RPEPEPEGNE PTTAIPVQRP PQPEESDATT KIPTQQDAGT DSASTEKLNA PEEQKRRGGG
MSAAELLRRE GRM
|
|---|
| |