| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmcs_0002 |
|---|
| Symbol | |
|---|
| ID | 4108927 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium sp. MCS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008146 |
|---|
| Strand | + |
|---|
| Start bp | 2069 |
|---|
| End bp | 3265 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 638029125 |
|---|
| Product | DNA polymerase III subunit beta |
|---|
| Protein accession | YP_637180 |
|---|
| Protein GI | 108796983 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
|---|
| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTGG TGCCGACGAC GGCGGGTCAC ACCGACCTGA AGTTCCGCCT GGTGCGAGAG
GACTTCGCCG ACGCAGTGGC CTGGGTGGCC CGCAATCTGC CGACCCGTCC GACCGTCCCC
GTGCTGGCCG GCGTGCTGCT CACCGGCGAC GACGACGGGC TGACGATCTC CGGATTCGAC
TACGAGGTTT CGGCCGAGGT GCGTGTCGTG GCCGAAATCG CTTCTCCGGG AAGCGTTCTG
GTGTCGGGAC GGCTGTTGTC CGATATCACC AAGGCGCTGC CCGCCAAACC CGTCGACGTC
AGCGTCGAGG GCACCCGCGT CTCGCTGACC TGCGGGAGCG CCCGCTTCTC GCTGCCGACC
ATGGCCGTCG AGGACTACCC CGCGCTGCCG ACGCTGCCGG ACGAGACCGG GGTGATCGGC
GCCGACCTGT TCGCCGAAGC CATCGGCCAG GTCGCGGTGG CCGCCGGCCG CGACGACACG
CTGCCGATGC TCACCGGCAT CCGCGTCGAG ATCACAGGCG AGAGTGTGGT TTTGGCGGCA
ACCGACCGGT TCCGCCTGGC GGTGCGCGAG TTGACCTGGT CGACGAGCTC GCCCGACGTC
GAGGCCGCGG TGCTGGTACC GGCCAAGACC CTCGCCGAGG CGGCCAAGGC CGGCACCGAC
GGGACCGATG TGCACCTGGC GCTGGGCGCC GGATCCGCGG TCGGCAAAGA GGGCCTGCTG
GGGATTCGCA GCGAGGGCAA GCGCAGCACC ACCCGCCTGC TCGACGCGGA ATTCCCGAAG
TTCCGCCAAC TGCTGCCCAG TGAGCACACC GCGGTCGCGA CGATCGGCGT CGCCGAACTC
ACCGAGGCGA TCAAGCGTGT CGCGCTGGTG GCCGACCGCG GCGCCCAGGT GCGGATGGAA
TTCGCCGACG ACGTGTTGCG GTTGTCCGCC GGCGCCGACG ACGTCGGACG CGCCGAGGAG
GACCTGGCCG TCGCGTTCTC CGGTGAGCCG CTCACCATCG CCTTCAACCC GACATATCTC
ACCGACGGCC TCGGCTCGCT GCATTCCGAG CGGGTGACGT TCGGCTTCAC GACGCCCAGC
CGGCCCGCGG TCCTCCGCCC GGCGGGCGAC GAGGACACCG GCGGTGGCGC CGGACCGTTC
CCGGCCCTGC AGACCGATTA CGTTTACCTG TTGATGCCGG TACGGCTTCC CGGCTGA
|
|---|
| Protein sequence | MDVVPTTAGH TDLKFRLVRE DFADAVAWVA RNLPTRPTVP VLAGVLLTGD DDGLTISGFD
YEVSAEVRVV AEIASPGSVL VSGRLLSDIT KALPAKPVDV SVEGTRVSLT CGSARFSLPT
MAVEDYPALP TLPDETGVIG ADLFAEAIGQ VAVAAGRDDT LPMLTGIRVE ITGESVVLAA
TDRFRLAVRE LTWSTSSPDV EAAVLVPAKT LAEAAKAGTD GTDVHLALGA GSAVGKEGLL
GIRSEGKRST TRLLDAEFPK FRQLLPSEHT AVATIGVAEL TEAIKRVALV ADRGAQVRME
FADDVLRLSA GADDVGRAEE DLAVAFSGEP LTIAFNPTYL TDGLGSLHSE RVTFGFTTPS
RPAVLRPAGD EDTGGGAGPF PALQTDYVYL LMPVRLPG
|
|---|
| |