Gene Bcen_6372 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen_6372 
Symbol 
ID4096918 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia AU 1054 
KingdomBacteria 
Replicon accessionNC_008062 
Strand
Start bp993568 
End bp996747 
Gene Length3180 bp 
Protein Length1059 aa 
Translation table11 
GC content68% 
IMG OID638019661 
Producthydrophobe/amphiphile efflux-1 HAE1 
Protein accessionYP_626208 
Protein GI107029113 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGATGC CATCGTTCTT CATCGATCGT CCCGTCTTTG CGTGGATCGT TGCGCTCGCA 
ATCGTCGTCG CGGGCGTGCT CGCCATTCCG CAGCTTCCGA TCGCGCAATA TCCGCGGCTT
GCGCCGCCGC GGGTCGTGAT CACGGCCGCC TATCCGGGCG CGTCGACCGA GACGGTCGAC
GGCGACGTCG GCAGCATCAT CGAGGAAAGC CTCGACGGCG CCGACGGGCT TCTGTATTAC
GCGACGAGCA GCGACGGTCA CGGCAATCTC GAGATCGACG TCACGTTTTC GCCCGGCACC
GATCCGGACA TCGCGCTCGT CGACGTGAAC AACCGGCTGA AGCAGGTCGA GCCGCGGTTG
CCGCAGCAGG TCGTCCAGCA GGGGATCAGC GTATTCAAGG CAGCGAACAC GTTCCTGATG
CTCGTCACGC TGACGTCGAC CGACGGCACG CGCGATTCCG CGCAACTCGG CGATTACCTG
AACCGCTACG TGCTGCGCGA ACTCAAGCGT GCGCCGGGCG TCGGCGCGGC CGAGCTGTGG
GACGCCGGCG AGGCGCTGCG GGTCTGGCTC GATCCGAACA AATTGCGTGA ATACGACCTC
GGCGCCGACG ACGTGATCGC GGCGATCGGC GTGCAGAACG CGACGGTGAC GGCCGGTGCG
ATCGGCGATG CGCCGTTCGA GCGCGGCCAG CAGCTCACCG CGACGATCGT CGTCAAGGGA
CAGCTAACGT CGCCGGAGGA GTTCGGCCGG ATCGTGCTGA AGTCGAAGCA GGACGGTTCG
GTGGTGCGCG TCGCCGACGT CGCGCGTGTC GAAATCGGCC GCGACGACTA TTCGTTCTAT
TCGCGGCTGA ACGGCCGCCC GGCGGCAACC GTCGGCATCC AGCTTGGCCC GCGCGGCAAC
GCGCTCGAAA CGTCGAACGC GATCCGTGCG CGGCTTGCCG AACTGTCGAG GGTATTGCCG
CCGGGCGTGG CGATGGAGAT TCCGTTCGAT GGCGCCCATT TCGTGACGAT CGCGATCCGG
GAGGTCGTGC TGACGCTCGT CGAGGCGGTC GTACTGGTGT TTTGCGTGAT GTGGCTGTTC
CTGCGCGATC TACGTTACAC GCTGGTGCCG ACCGTCGTGA TTCCCGTCAC GCTGATGGGT
GCGTTCGTCG CGATGTGGGC GTTCGGACTG TCGATCAACG TGTTCACGAT GTTCGGTCTC
GTGCTGGCGA TCGGCATCCT TGTCGACGAT GCGATCGTCG TCGTCGAGAG CGTGCACCGG
GTGATGGAGG AGGGCGTGTC GCCGCGCGAC GCCACGCGCC GCGCAATGAA GCGGATCGGC
GGTGCGATCG TCGGGGTGAC CGCGGTGCTG ACCGCCGTAT TCGTGCCGAT GGCGTTTTTT
CCGGGCGCCG TCGGCGGCAT CTACCGGCAG TTCGCGGTGG CGATGATCGC ATCGATGCTG
GTGTCGTCGT TCATGGCGCT GTCGCTTACG CCCGCGCTGT GCGCGAACCT GCTGAAGCCC
GTCGCGCGAC ACGACGGCGG AATCGGCCAC GCGCGGCGAC GTGGCATCGG CACGCATCTG
GCCGACTGCT TCGGTGCGGC CTTCGCGCGC GTCGAATCCG GTTATCGCCG TCTCGCCGTG
TTCGCCGTGG GCCGCACCGG CATGGTCGTG GTGGTCTACG CGGCGCTCGT GATCGCATGC
GGGCTGCTGT ACTGGATGAT GCCGGGCGGC TTCCTGCCGA CCGAGGACCA GGGGCAACTG
CAGGTGATGA TCCAGTTGCC GGCGGGCGCC ACGCAGGCGC GCACGCTCGC GGTCGTCGAG
CGCGTCGAGG CGATCCTGCG CGCGGAGCCG GCGATCGCGA ACGTGACGAG CGTGATCGGC
TGGAGTTTCG CGGGCAGCGG GCAGAACGTC GGGATGGCGT TCGTGGAGCT GAAGGACTGG
GCGCGGCGCG ACGTCGACGC GATGGCGTTG CGCGACCGGC TCAACGGGCG TTTCGGCACG
ATCCTCGACG GCGACGTCGA GGCGTCGCTG CCGCCGTCGG TGCGCGGCAT CGGGCATTCC
GACGGATTCA CGTTCCGGCT CGAGGATCGC GGCGGCGTCG GGCTCGACGC GTTGAAGGCG
GCTCGCGAGC AGTTGTCCGG ACGAGCGAAA GCGGATCCGT TGCTCGCCGC CGTGCATTTC
GAAGACCTGC CGGACGCGCC GCGCATCGAA CTCGATGTCG ATCGTGCGAA GGCGTATGCG
CTCGGCGTGC CGTTCGAGAG AATCGCGGGC CTTCTGGGCG GCACGTTCGG CTCGAACTAC
ATCAACGATT TTCCGGCATC GGGCCGGATG CGGCGGGTGA TCATCGAGGC CGACCCGGCC
GCGCGCACGA CCGATGCGCA ACTGATGGCG CTGACGGTGC CGAACCGCAC CGGCGACATG
GTTCCGTTGT CGGCCATCGC CGCGCCGCAC TGGACGGTCG GCCCGGTGAT GCTGAATCGC
TACAACGGCT ATCCGTCGCT CGACATCAGC GGCCGCGCGG CGACCGGCAC GAGTTCGGGC
GCGGCGATGG CGGAGATGGA GCGGCTCGCC GGCGCACTGC CGGTCGGGAT CGGCTTCGAC
TGGGTCGATG CGGCGCGCGA GGAGCAGGTT GCCGCGCGGC AAACGCCGCT GCTCGTCGGG
CTGTCCGTGC TCGCGGTTTT CATGGCGCTT GCCGCGCTGT ACGAAAGCTG GACGGTCCCG
CTGTCCGTGC TGACGATCGT GCCGCTCGGC ATGATCGGCG CGATCGCGGC GGCGCTCGCG
CGCGGGTTGC CGAACGACGT GTATTTCAAG GTCGGGATGA TCACGGTGGT CGGGCTGGCG
GCGAAGAATG CGATCCTGAT CGTGCAGTAC GCGCGCGATC TGGCCGGGAG CGGCGTGCCG
CTGCGGCAGG CGGTGATCGA CGCGGCCGCC GCGCGATTCC GGCCGATCAT GATGACGTCG
ATGGCGTTCC TGCTGGGCGT CGTGCCGCTC GTGCTGGCGA CCGGCGCGGG TGCGGAAAGC
CGGCGATCGA TCGGCACGGG CGCGTTCGGG GGCGTACTCG CTGCGACGAT GTTCGGGCTC
GTGTTCGCGC CGGTGGCGTT TCGGGTGGTG GTATCCATAG GCCGGCGCGG GCGGCATGCG
GTGGTGACGA AGCGCGACGC GCAGCGCGTG GAAGCGGCTG AAAATCAGGA GATCGATTGA
 
Protein sequence
MPMPSFFIDR PVFAWIVALA IVVAGVLAIP QLPIAQYPRL APPRVVITAA YPGASTETVD 
GDVGSIIEES LDGADGLLYY ATSSDGHGNL EIDVTFSPGT DPDIALVDVN NRLKQVEPRL
PQQVVQQGIS VFKAANTFLM LVTLTSTDGT RDSAQLGDYL NRYVLRELKR APGVGAAELW
DAGEALRVWL DPNKLREYDL GADDVIAAIG VQNATVTAGA IGDAPFERGQ QLTATIVVKG
QLTSPEEFGR IVLKSKQDGS VVRVADVARV EIGRDDYSFY SRLNGRPAAT VGIQLGPRGN
ALETSNAIRA RLAELSRVLP PGVAMEIPFD GAHFVTIAIR EVVLTLVEAV VLVFCVMWLF
LRDLRYTLVP TVVIPVTLMG AFVAMWAFGL SINVFTMFGL VLAIGILVDD AIVVVESVHR
VMEEGVSPRD ATRRAMKRIG GAIVGVTAVL TAVFVPMAFF PGAVGGIYRQ FAVAMIASML
VSSFMALSLT PALCANLLKP VARHDGGIGH ARRRGIGTHL ADCFGAAFAR VESGYRRLAV
FAVGRTGMVV VVYAALVIAC GLLYWMMPGG FLPTEDQGQL QVMIQLPAGA TQARTLAVVE
RVEAILRAEP AIANVTSVIG WSFAGSGQNV GMAFVELKDW ARRDVDAMAL RDRLNGRFGT
ILDGDVEASL PPSVRGIGHS DGFTFRLEDR GGVGLDALKA AREQLSGRAK ADPLLAAVHF
EDLPDAPRIE LDVDRAKAYA LGVPFERIAG LLGGTFGSNY INDFPASGRM RRVIIEADPA
ARTTDAQLMA LTVPNRTGDM VPLSAIAAPH WTVGPVMLNR YNGYPSLDIS GRAATGTSSG
AAMAEMERLA GALPVGIGFD WVDAAREEQV AARQTPLLVG LSVLAVFMAL AALYESWTVP
LSVLTIVPLG MIGAIAAALA RGLPNDVYFK VGMITVVGLA AKNAILIVQY ARDLAGSGVP
LRQAVIDAAA ARFRPIMMTS MAFLLGVVPL VLATGAGAES RRSIGTGAFG GVLAATMFGL
VFAPVAFRVV VSIGRRGRHA VVTKRDAQRV EAAENQEID