Gene Bcen_6259 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen_6259 
Symbol 
ID4097399 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia AU 1054 
KingdomBacteria 
Replicon accessionNC_008062 
Strand
Start bp868445 
End bp869533 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content66% 
IMG OID638019549 
ProductRNA polymerase sigma factor RpoS 
Protein accessionYP_626096 
Protein GI107029001 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.295107 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGAAAT CGAAGCGCCA CGAGCCGCAA GCCGAGTCTG AGAAGATCAG TCGTGCCACG 
CAAGCATCGG TGGGGCGAGT GGGTGCTTCG ACGGACGACG AAGAGGATGT CGCGGAAAAC
GAACGTGATC TCGAGGCACG CGACGCCGAC GCGGACGGTG GCGACGACGA GCGCGAAGGC
CGCCAGGAAG CCGCGCCCGA CGTCGACGAT TTCCGCACGC TGCTGCAGGC CGAGCTCACG
GCCGACACGA TCCAGCATTA CCTGAACCGC ATCAGCGTGA AGCCGCTGCT GACCGTCGAG
GAAGAGCAGC GTTATTCGCG TCTCGCGAAG GCCGGCGAAT TCGAGGCGCG GCAGGTGATG
ATCGAGCGCA ATCTGCGGCT CGTCGTCAGT ATCGCGAAGG GCTACCTGAA CCGCGGCGTG
CCGCTGCTCG ACCTGATCGA GGAAGGCAAC CTCGGCCTGA TGCACGCGAT CGAGAAATTC
GACCCGACGC GCGGTTTCCG TTTCTCGACC TACGCGACGT GGTGGATCCG GCAGAGCATC
GAGCGGGCGA TCATGAATCA GGCCCGCACG GTGCGCCTGC CCGTGCACGT GATCCGCGAA
CTGAACCAGG TGCTGCGCGC GAAGCGCCAC CTCGAAAAGA ACTCGATGTC GACGGGCGAA
GCGGCCGAAC GCCGCGAAGC CAGCATCGAC GACATCGCCT ATCTCACCGG CAAGACCGCC
GAGGAAGTCA CCGATATCCT CGCGCTCAAC GAGCACACGG CGTCACTCGA TGCGCCGCTC
GACCCCGATC CCGCGAGCAG CCTGCTCGAC CTGCTGCCCG ACGACCAGAG TCAGTCGCCC
GACGCCGAGG TGCAGCACCG CGAGCTCGAA ACGCTGACGC GCGCGTGGCT GTCGCGTCTG
TCCGACAAGC ACCGGCACGT GATCGAGCGC CGCTTCGGTC TGAACCACAT CGAACCGGCG
ACGCTCGAGG AGCTCGCCGA CGAGATGGGG CTCACGCGCG AACGCGTGCG GCAGATCCAG
CAGGAAGCGC TGGTGCGCCT CAAGCGGTTC TTCGCCTCCA ACGGCGTGCG CAAGGACGCC
GTTCTGTAA
 
Protein sequence
MPKSKRHEPQ AESEKISRAT QASVGRVGAS TDDEEDVAEN ERDLEARDAD ADGGDDEREG 
RQEAAPDVDD FRTLLQAELT ADTIQHYLNR ISVKPLLTVE EEQRYSRLAK AGEFEARQVM
IERNLRLVVS IAKGYLNRGV PLLDLIEEGN LGLMHAIEKF DPTRGFRFST YATWWIRQSI
ERAIMNQART VRLPVHVIRE LNQVLRAKRH LEKNSMSTGE AAERREASID DIAYLTGKTA
EEVTDILALN EHTASLDAPL DPDPASSLLD LLPDDQSQSP DAEVQHRELE TLTRAWLSRL
SDKHRHVIER RFGLNHIEPA TLEELADEMG LTRERVRQIQ QEALVRLKRF FASNGVRKDA
VL