Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen_5838 |
Symbol | |
ID | 4096563 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia AU 1054 |
Kingdom | Bacteria |
Replicon accession | NC_008062 |
Strand | + |
Start bp | 391971 |
End bp | 395162 |
Gene Length | 3192 bp |
Protein Length | 1063 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 638019110 |
Product | hydrophobe/amphiphile efflux-1 HAE1 |
Protein accession | YP_625676 |
Protein GI | 107028581 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.347364 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCAAGT TCTTTATCGA TCGCCCGATC TTCGCGTGGG TGATCGCGAT CGTGCTGATG CTGGCCGGCG TTGCATCGAT CTTCAAGATG CCGATCGCGC AGTATCCGAC GATCGCACCG CCGACGATCC AGATCCAGGC GAACTATCCG GGCGCTTCCG CGAAGACGGT GGAAGACACG GTGACGCAGG TGATCGAGCA GCAGATGAGC GGGCTCGACA ACTTCCTGTA CATGTCGTCG ACGAGCGACG ATTCGGGCAA CGCGACGATC ACGCTGACCT TCTCGCCGGG CACGAATCCG GACGTCGCGC AGGTCCAGGT GCAGAACAAG CTGTCGCTCG CGACGCCGAA CCTGCCGCAG GTCGTGCAGC AGCTCGGCAT GCAGGTGACG AAGTCGAGCA GCAACTGGCT GATGTGGTTC GCGTTCAACT CCGAGGACGG CCGGATGTCG AAGGAGGACC TGACGAACTA CGTGGCCTCG CACGTGCTCG ATCCGCTGAG CCGCGTGAAC GGCGTCGGCC AGACGCTGCT GCTCGGTTCG CAGTTCTCGA TGCGGATCTG GCTCGACCCG ATCAAGCTGA CCAACTACAG CCTCACGCCG ACCGACGTGA CGGCCGCGAT CACGCAGCAG AACGTGCAGA TCGCGGGCGG CCAGATCGGC GGCACGCCGG CGAAGCCGGG CACCGTGCTG CAGGCGACGA TCACCGAATC GACGCTGCTG CGCACGCCCG AGCAATTCGG CAACATCCTG CTGAAGGTCA ACCAGGACGG CTCGCAGGTT CGCCTGAAGG ACGTCGGCCG CGCGGCGCTG GGTTCGGAGA ACTACACGTT CGACACGAAG TACATGGGAC AGCCGACAGC CGGCCTCGGT ATCCAGCTCG CGACCGGTGC GAACGCGCTG GCGACCGCGA ACGCGCTGCG GGCCAAGATC GACGAGCTGT CGAAGTACTT CCCGCACGGT CTCGTCGTGC ACTACCCGTA CGACACGACG CCGTTCGTGC GCCTGTCGAT CGAGGAAGTG GTCAAGACGC TGATCGAGGG CATCGTGCTC GTGTTCCTCG TGATGTACCT GTTCCTGCAG AACCTGCGCG CGACGATCAT CCCGACGATC GCGGTGCCGG TCGTGCTGCT CGGTACGTTC GCGATCATGG GCCTCGCCGG GTTCTCGATC AACACGCTGT CGATGTTCGG CCTCGTGCTC GCGATCGGCC TGCTGGTCGA CGATGCGATC GTGGTGGTGG AGAACGTCGA ACGCGTGATG GCGGAGGAAG GGCTGTCGCC GAAGGAGGCG ACCCGCAAGG CGATGAGCCA GATCACCGGC GCGCTCGTCG GCGTGGCGCT CGTGCTGTCG GCGGTGTTCG TGCCGGTGGC GTTCTCCGGC GGCTCGGTCG GTGCGATCTA TCGTCAGTTC TCGCTGACGA TCGTGTCGGC GATGGTGCTG TCCGTGCTCG TCGCGTTGGT TCTGACGCCG GCCCTGTGCG CGACGATCCT GAAGCCGATC GAGAAGGGGC ATCACGAAGA GAAGAAGGGC TTCTTCGGCT GGTTCAACCG GACGTTCGAT CGCAGCCGCG ATCGCTACAC GAGCGGCGTG AACCACGTGA TCAAGCGCTC GGGCCGCTGG CTCGTGATCT ATCTCGCCGT GTTCCTCGCG GTCGGCGTGA TGTTCGCGCG GCTGCCGAAG TCGTTCCTGC CCGACGAAGA CCAGGGCTAC ATGTTCATGA TCGTGCAGAC GCCGTCCGGC TCCACGCAGG AAACGACCGG CAAGACGCTC GACAACATCA ACACGTACCT GACCACCGCC GAGAAGGACG TGGTCGACTC GGTGTTCACG GTCAACGGCT TCAGCTTCGC GGGCCGCGGC CAGAATGCGG GCCTCGTGTT CGTGAAGCTG AAACCGTACG AGCAGCGCCA GCGTTCGGAC CAGAAGGTGC AGGCGCTGAT CGGCCGGACC TTCGCGCACT ATTCGACGTA CAAGGACGGG ATGGTGATTC CGTTCAACCC GCCGTCGATT CCCGAACTCG GCACGGCTGC CGGTTTCGAC TTCGAGCTGA CGGACAACGC CGGCCTCGGT CACGAAGCGC TGATGGCCGC GCGCGGCCAG TTGCTCGGGC TGGCCGCGAA GGACCCGGCG CTGGCGCTGG TGCGCCCGAA CGGCCTGAAC GACACGCCGC AGTACAAGGT CGACATCGAT CGCGAGAAGG CGAACGCGCT CGGCGTGACG GCCGCGGCGA TCGACCAGAC GTTCTCGATC GCATGGGCGT CGCAGTACGT GAACAACTTC CTCGATACCG ACGGCCGGAT CAAGAAGGTG TACGTACAGT CGGACGCGCC GTTCCGGATG ACGCCGGAGG ACATGAACAT CTGGTACGTG CGCAACAGCG CGGGCGGGAT GGTGCCGTTC AGCGCGTTCT CGACCGGTCA CTGGATCTAC GGGTCGCCGA AGCTCGAGCG TTACAACGGC GTGTCGTCGA TCGAGATCCA GGGGCAGGCC GCGGAAGGCA AGTCGACCGG CCAGGCGATG GCCGCGATGG AAGCGCTCGC GAGCAAGCTG CCGGAAGGCA TCGGCTATTC GTGGACGGGC CTGTCGTTCC AGGAAATCCA GTCCGGCTCG CAGGCGCCGA TCCTGTATGC GATCTCGATC CTCGTCGTGT TCCTGTGTCT CGCGGCGCTG TATGAAAGCT GGTCGATTCC ATTCTCGGTG ATCATGGTCG TGCCGCTCGG CGTGGTCGGC GCGCTGCTCG CGACGATGCT GCGCGGTCTC GAGAACGACG TGTTCTTCCA GGTCGGCCTG CTGACGACCG TGGGCTTGTC TGCAAAGAAC GCGATCCTGA TCGTCGAGTT CGCGCGCGAG CTGCAGGCGG GGGGGAACAT GGGGCCGGTG CGTGCGGCGA TCGAGGCGGC GCGCCTGCGG CTGCGTCCGA TCCTGATGAC GTCGCTCGCG TTCATGCTGG GCGTGCTGCC TCTCGCGATC AGTAACGGCG CGGGCTCGGC CAGCCAGCAT GCGATCGGTA CGGGCGTGAT CGGCGGGATG ATCACGGCGA CGTTCCTCGC CATTTTCATG ATCCCGATGT TCTTCGTGCG GGTTCGCGCG ATCTTCAGCG GCGAGACGGA AAACGTCGAC GACGCATGGC GTCTCGTGCA GGGCGACCTG CAGCGCGGTC ACGACGACGC ACACGATTCG AAGGGGCAGT AA
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Protein sequence | MAKFFIDRPI FAWVIAIVLM LAGVASIFKM PIAQYPTIAP PTIQIQANYP GASAKTVEDT VTQVIEQQMS GLDNFLYMSS TSDDSGNATI TLTFSPGTNP DVAQVQVQNK LSLATPNLPQ VVQQLGMQVT KSSSNWLMWF AFNSEDGRMS KEDLTNYVAS HVLDPLSRVN GVGQTLLLGS QFSMRIWLDP IKLTNYSLTP TDVTAAITQQ NVQIAGGQIG GTPAKPGTVL QATITESTLL RTPEQFGNIL LKVNQDGSQV RLKDVGRAAL GSENYTFDTK YMGQPTAGLG IQLATGANAL ATANALRAKI DELSKYFPHG LVVHYPYDTT PFVRLSIEEV VKTLIEGIVL VFLVMYLFLQ NLRATIIPTI AVPVVLLGTF AIMGLAGFSI NTLSMFGLVL AIGLLVDDAI VVVENVERVM AEEGLSPKEA TRKAMSQITG ALVGVALVLS AVFVPVAFSG GSVGAIYRQF SLTIVSAMVL SVLVALVLTP ALCATILKPI EKGHHEEKKG FFGWFNRTFD RSRDRYTSGV NHVIKRSGRW LVIYLAVFLA VGVMFARLPK SFLPDEDQGY MFMIVQTPSG STQETTGKTL DNINTYLTTA EKDVVDSVFT VNGFSFAGRG QNAGLVFVKL KPYEQRQRSD QKVQALIGRT FAHYSTYKDG MVIPFNPPSI PELGTAAGFD FELTDNAGLG HEALMAARGQ LLGLAAKDPA LALVRPNGLN DTPQYKVDID REKANALGVT AAAIDQTFSI AWASQYVNNF LDTDGRIKKV YVQSDAPFRM TPEDMNIWYV RNSAGGMVPF SAFSTGHWIY GSPKLERYNG VSSIEIQGQA AEGKSTGQAM AAMEALASKL PEGIGYSWTG LSFQEIQSGS QAPILYAISI LVVFLCLAAL YESWSIPFSV IMVVPLGVVG ALLATMLRGL ENDVFFQVGL LTTVGLSAKN AILIVEFARE LQAGGNMGPV RAAIEAARLR LRPILMTSLA FMLGVLPLAI SNGAGSASQH AIGTGVIGGM ITATFLAIFM IPMFFVRVRA IFSGETENVD DAWRLVQGDL QRGHDDAHDS KGQ
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