Gene Bcen_5608 details

Gene Information

• Locus tag: Bcen_5608
• ID: 4096836
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia cenocepacia AU 1054
• Kingdom: Bacteria
• Replicon accession: NC_008062
• Strand: -
• Start bp: 130980
• End bp: 136874
• Gene Length: 5895 bp
• Protein Length: 1964 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 638018884
• Product: excinuclease ABC, A subunit
• Protein accession: YP_625450
• Protein GI: 107028355
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0178] Excinuclease ATPase subunit
• TIGRFAM ID: [TIGR00630] excinuclease ABC, A subunit

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGTCATCCA GCAATCTGAT CCGCATTCGC GGAGCACGTC AGCACAACCT CAAGAATCTC 
GATCTCGACC TGCGCACCGG TGAAATGACG GTCGTGACCG GCCCGTCGGG CTCCGGCAAG 
TCGAGTCTCG TGTTCGACAC GCTGTACGCG GAAGGCCAGC GGCGCTACGT CGAAACCTTC 
AGCGCGTACG CGCGGCAGTT CCTCGACCGG ATGGATCGTC CGCAGGTCGA GCGCGTCGAC 
GGCGTGCCGC CCGCGATCGC GATCGACCAG ACCAATCCGG TTCGGAGTTC GCGGTCGACC 
GTCGGCACGA TGACCGAGCT GAACGACCAC CTGAAGCTGC TGTACGCGCG CGCGGCCGAG 
CTGTTCGACC GCAAGACCGC GCGGCAGGTG CGGCACGACA CGCCGGAGAC GATTTACGCG 
GAACTCGTCG CGCGCACGCA GGCGGACGAT CCGCGCGTCG TCGTCACGTT CCCGGTCGAA 
TTGCCGGAGG CGGTGTCCGA CGAGGAAATC GCGCAGTGGC TGTCGGCGAG CGGCTACACG 
CGCGTGCAGG CGCAGCGCGA GGTCGCGTCG CCCACCGGGC CGCGCAAGAT GCTCGACGTG 
GTGGCCGACC GCTTTCGCGT GCAGCAGGCC GACAAGGCGC GGGTGGTGGA GGCGATCGAG 
GCGTCGCTGA AGCGCGGCGG CGGTCGCGTG AACGTGTACG TGCTGGCCGC GGACGCGGAA 
AACGCAACGG CCGAGCCGTT GATCTGGCGC TTTTCCACCG GGCTCCATGA TCCCGACAGC 
GACCTGCGCT ACGCGGAGCC GCAGGCGGCG CTGTTCTCGT TTAACTCGGC GTACGGTGCG 
TGCGAAACCT GCCGCGGCTT CGGCCGCGTG ATCGGCGTCG ATCTCGGCCT CGTGATTCCC 
GACGCGCGCA AGACGCTGCG TGGCGGCGCG ATCAAGCCGA TGCAGACGCC CGCGTGGAAA 
GAGTGCCAGG ACGACCTGAT GCGCTACGCG GCGAAGGCCG GCATCCGGCG CGACGTGGCG 
TGGTCCGAGC TGACGGACGC CGAGCGCGAC TGGGTCGTCA ACGGTTCGCC GGACTGGAAC 
GGCAAGTGGC AGAGCCAGTG GTACGGCGTG AAGCGCTTCT TCGGCTATCT CGAATCGAAA 
GCGTACAAGA TGCACATTCG CGTGCTGCTG TCGAAATACC GCAGCTACAC GCCGTGCGAC 
GTGTGCGGCG GCGCGCGCCT GAAGACGGAG TCGCTGCAAT GGCGGCTCGG CTCGAAAGAG 
AATGCCGACG CCGTGCTCGC GCCGGCCGAC CGCTTCATGC CGCGCGGCGT CGACTGGAGC 
CGCGCGCAGC TCGAAACGCT GCCGGGCCTG ACCGTGCACG ATCTGATGCT GCTGCCGATC 
GAGCGCATCC GCCGCTTCTT CGACGACATC GTGCTGCCGA GCGCGCTGCT CGACGACGCA 
TTGAAGCTGC TGCTCGCCGA GGTGCGCACG CGCCTGAAAT ACCTGTGCGA CGTCGGGCTC 
GGCTACCTGA CGCTCGACCG GCAAAGCCGC ACGCTGTCGG GCGGCGAGGT GCAGCGGATC 
AACCTGACGA CGGCGCTCGG CACGTCGCTC ACGAAAACCC TGTTCGTGCT CGACGAACCG 
AGCATCGGGC TGCATCCGCG CGATCTCACG CGGATCGTCG AGGCGATGCA GCGGCTGCGC 
GACGCGGGCA ACACGCTGGT CGTGGTCGAG CACGATCCGT CGGTGATGCT CGCGGCCGAT 
CGATTGATCG ACATGGGCCC CGGCCCGGGC GAACGCGGCG GCACGATCGT GTACGACGGC 
ACGCCCGGCG ATATCCGTTC GGCGCGCACG CTGACGGGCG AGTATCTCGG CGGCCGCAAG 
CAGGTCGCGC ATGCGTCGAA CTGGGCGCGC CGCGTGGTCG ACGCAAACAC GCCGCGCATC 
GTGCTCGAAG GCGCGACCGA GCACAACCTG CGCGACGTCA CCGTCGAGAT CCCGCTGCAG 
CGGCTCGTGT GCGTGACGGG CGTATCCGGC TCCGGCAAAT CCACGCTGCT GCAGGACGTG 
CTGTATCCGG CGATGGCGCG CCATCACGGC AAGGCGACCG AATCGCCGGG CGCGTTCCGC 
AGCCTCACGG GCGCCGACCA GGTCGGCGAC GTCGTGTTCG TCGACCAGTC GCCGATCGGC 
AAGACCACGC GCTCGAACCC GGCGAGCTAC GTCGGCGCGT TCGACGAAAT CCGCAAGCTG 
TTCGCGAAGG CGCCGCTCGC GCTGCAACGC GGCTACGGCG CCGGCACGTT CAGCTTCAAC 
TCGGGCGACG GCCGTTGCCC GACCTGCGGC GGCTCGGGCT TCGAACACAT CGAAATGCAG 
TTCCTGAGCG ACGTCTACCT GCGTTGCCCG GATTGCGACG GCAGCCGCTA CCGCGCCGAG 
ATTCTCGAAG TGCGCATCGA GCGCGACGGC CGCGCGCTGA ACATCGCCGA TGTGCTCGAT 
CTCACCGTCA GCGAGGCGGC CGCGTTCTTC GCGACCGATG CCGAGGTGCT GCGCGTGCTG 
CAGCCGATCG TCGACGTCGG CCTCGAATAC GTGAAGCTCG GCCAGCCGGT GCCGACGCTG 
TCGGGCGGCG AAGCGCAGCG CCTGAAGCTC GCCGGCTTCC TCGCCGAATC CGCGGCGGCG 
GCCAACGGGC GCCGGGTCGC GACCGAAGAG GCGCGCATCG CCCGCGCGAA GCTGTTCATG 
TTCGACGAGC CGACCACCGG GCTGCACTTC GACGACATCG CGAAGCTGAT GCAGGCGTTC 
GGCAAGCTGC TCGCGGCCGG CCATTCGCTG ATCGTGATCG AGCACAACCT CGACGTGATC 
CGCGCGGCCG ACTGGCTGAT CGATCTCGGT CCGGAAGGCG GCGACGGCGG CGGCCTGGTG 
CTGTGCGCGG GCACGCCCGA CGACGTGAAG GCCTGCGCCG AATCGCATAC CGGCGTGGCG 
CTGCTGCAGT ACGACCGCGA GATGGAGGGC GCAGCCGCGG CTGCCGACGA AGGCGTGCCG 
CTGCAGGCCG CGCTGAACGC GGCGCGCGCG CGCCGTGCGA TCGAAGGCGA GGACGTCGTG 
CGGATCGTCA ACGCGCGCGA GCACAACCTG AAGTCGCTCG ACGTCGACAT CCCGCACGGC 
AAGTTCAACG TGATCACCGG CGTGTCGGGT TCCGGCAAGT CGACGCTCGC GTTCGACATC 
CTGTTCCACG AAGGCCAGCG CCGCTACCTC GAATCGCTGA ACGCGTATGC GCGCTCGATC 
GTGCAGCCGG CCGGCCGCCC CGAGGTCGAC GCGGTGTACG GCATTCCGCC GACCGTCGCG 
ATCGAGCAGC GGCTATCGCG CGGCGGGCGC AAGAGCACGG TCGCGACCAC GTCCGAAGTG 
TGGCATTTCC TGCGGCTGCT GTATGTGAAG CTCGGCCTGC AGCATTGCAT CCACGACGGC 
ACGCCGGTCA CGTCGCAATC CGTCGAATCG ATCGCCGCGC AACTGCTGCG CGATCATCGC 
GGCGAACACG TCGGGCTGCT CGCGCCGCTC GTCGTCAATC GCAAGGGCGT CTACACCGAT 
CTCGCGAAGT GGGCGAAGGC GCGCGGCAGC ACGCATCTGC GCGTCGACGG CGAGTTCGTC 
ACGGTCGATC CGTGGCCGAA GCTCGACCGG TTCCGTGAAC ACACGATCGA ATTGCCGGTG 
GCCGATATCG TCGTGTCGCC GGACAACGAG GCGGAGTTGC GGCGCAGGCT CGACGAGACG 
CTCGAGCTCG GCAAGGGCGT GATGCATCTG CTCGCGCCGC TCGACGGGCT GCATCACGCG 
ATGCAGAACG ATCATTCGAC CGCGCAGGTC GGCGCGGTCA AGGTGCTGTC GGTGAAGCGC 
GCGTGCCCGG TATGCGGCAC GAGCTATCCG GAACTCGACC CGCGGATGTT CTCGTACAAC 
AGCAAGCACG GCTGGTGCAC GACCTGTGTC GGCACCGGCG TCACGCTCAC CCGCGAGCAG 
CGCGCCGCGT ATGACGACAC GGTGCTCGCC GGCGACGATC GCGGCCGCGA ACAGACGCTG 
CCGTCGGACG AGCAGGAGCC GGAAGGCGTC GGCAACGAGC CGTGCCCGGA TTGCCACGGC 
ACGCGGCTGA ATCCGTCCGC ACGCGCGGTC ACGTTCGATG CGCATCCGAT CGTGGAGGTC 
GCGCAGTGGA CGGTGTCGGA CACGCGCCGC TGGATCGACG CGCTGGAACT CACCGGGCGC 
GACGCGCAGA TCGCGCGCGA CATCGTCAGC GAGATCGGCA GCCGCCTCGC GTTTCTCGAG 
GAAGTCGGGC TCGGCTACCT GAGCCTCGAT CGCGCGGCGC CGAGCCTGTC GGGCGGCGAA 
GCGCAGCGCA TCCGGCTGGC CGCGCAGCTC GGCAGCAACC TGCAGGGCGT GTGCTACGTG 
CTCGACGAGC CGACCATCGG CCTGCATCCG CGCGACAACC AGATCCTGCT GGATGCATTG 
CGCAAGCTCG GCGACAAGGG CAATACGCTG GTCGTCGTCG AGCATGACGA GGACACGATC 
CGCCGCGCGG ATCAGATCAT CGACGTCGGC CCGGGCGCCG GCAAGCGCGG CGGCACGCTG 
GTCGCGCAAG GCGCGGTGGC CGATCTCGCC GCGCAGGCCG ATTCGGTGAC GGGGCGCCTG 
CTCGCGCAGC CGATGACGCA CCCGCTGCAA CCCCGCCGCA GCGTGAGCCT GCCGGGCAAG 
AAGGGCGGCG AAGCCGTGCC GGAAGCGTGG CTGACCGTGC ATGGCGCGCG GCTGCACAAC 
CTGCGCGACG TCACGGTCGG CATTCCGCTC GCGCGTCTCG TCGCGGTCAC CGGCGTCAGC 
GGTTCGGGCA AGTCGACGCT CGCACGCGAC GTGCTGATGA CGAACCTGCT GGATGCGGTC 
GGCCGCTCGG TGCTGTCGTC GCCCGCCACG CGACGTGCGC GCAAGGCCGC GCAGCAGGAC 
GCGCCGGCCG CCAACCGTCG TTCGAGCGTG CTCGCGCGCA GCGCACCGCG GCCGTCGCTG 
AACGTCACGC ATGCGTGGCA AGGCTGCGAG TCGCTGAGCG GCTGGGAGCA GATCGATCGC 
GTGCTCGAAG TCGACCAGAC GCCGATCGGC AAGACGCCGC GTTCGTGCCC GGCCACCTAT 
ATCGGCGTGT GGGACACGAT CCGCAAGCTG TTCGCCGATA CGCTCGAAGC GCGCGCACGC 
GGCTATACGG CGTCGCGTTT CTCGTTCAAT ACCGGCGACG GGCGCTGCCC CGCGTGCGAA 
GGGCAAGGCG TGCGCACGAT CGGCATGAGC TTCCTGCCGG ACGTGAAGGT GCCGTGCGAC 
GTGTGCCACG GGCAGCGCTT CAATCCGGAA ACGCTCGCCG TCACGTGGCG CGGCCGGAAC 
ATCGGCGACG TGCTGACGAT GGAGATCGAC GAGGCGGTCG AGTTTTTCGC GCCGATCTCG 
AACATCGCGC ATCCGCTGCA GCTGATGAAG GACGTCGGGC TCGGCTATCT GACGCTCGGC 
CAGCCGTCGC CGACGCTGTC CGGCGGCGAG GCGCAGCGCA TCAAGCTCGT CACCGAGCTG 
ACGAAGGTGC GCGACGACAT CACGCGGCGC GGCCAGAAGG CGCCGCATAC GCTGTACGTG 
CTCGACGAGC CGACGGTCGG CCTGCATATG GCCGACGTCG CGAAGCTGAT CCGCGTGCTG 
CACCGGCTGG TGGATGCCGG GCATAGCGTC GTCGTGATCG AACACGATCT CGACGTGATC 
GCGGAAGCCG ACTGGATCAT CGATCTCGGG CCCGAAGGCG GCGTGGGCGG CGGCACGATC 
GTCGCGGCGG CGCCGCCGGA AGGGCTCGTG CAGGTGAAGG CCAGCCATAC CGGGCAAGCG 
CTGAAGCCGG TGCTGGCCCG AGCGGCCAGC GAAGACGCCG AAGTGGAGCA GCAGGGCGCG 
GCGCGGGTCG GCTGA 

 

Protein sequence

MSSSNLIRIR GARQHNLKNL DLDLRTGEMT VVTGPSGSGK SSLVFDTLYA EGQRRYVETF 
SAYARQFLDR MDRPQVERVD GVPPAIAIDQ TNPVRSSRST VGTMTELNDH LKLLYARAAE 
LFDRKTARQV RHDTPETIYA ELVARTQADD PRVVVTFPVE LPEAVSDEEI AQWLSASGYT 
RVQAQREVAS PTGPRKMLDV VADRFRVQQA DKARVVEAIE ASLKRGGGRV NVYVLAADAE 
NATAEPLIWR FSTGLHDPDS DLRYAEPQAA LFSFNSAYGA CETCRGFGRV IGVDLGLVIP 
DARKTLRGGA IKPMQTPAWK ECQDDLMRYA AKAGIRRDVA WSELTDAERD WVVNGSPDWN 
GKWQSQWYGV KRFFGYLESK AYKMHIRVLL SKYRSYTPCD VCGGARLKTE SLQWRLGSKE 
NADAVLAPAD RFMPRGVDWS RAQLETLPGL TVHDLMLLPI ERIRRFFDDI VLPSALLDDA 
LKLLLAEVRT RLKYLCDVGL GYLTLDRQSR TLSGGEVQRI NLTTALGTSL TKTLFVLDEP 
SIGLHPRDLT RIVEAMQRLR DAGNTLVVVE HDPSVMLAAD RLIDMGPGPG ERGGTIVYDG 
TPGDIRSART LTGEYLGGRK QVAHASNWAR RVVDANTPRI VLEGATEHNL RDVTVEIPLQ 
RLVCVTGVSG SGKSTLLQDV LYPAMARHHG KATESPGAFR SLTGADQVGD VVFVDQSPIG 
KTTRSNPASY VGAFDEIRKL FAKAPLALQR GYGAGTFSFN SGDGRCPTCG GSGFEHIEMQ 
FLSDVYLRCP DCDGSRYRAE ILEVRIERDG RALNIADVLD LTVSEAAAFF ATDAEVLRVL 
QPIVDVGLEY VKLGQPVPTL SGGEAQRLKL AGFLAESAAA ANGRRVATEE ARIARAKLFM 
FDEPTTGLHF DDIAKLMQAF GKLLAAGHSL IVIEHNLDVI RAADWLIDLG PEGGDGGGLV 
LCAGTPDDVK ACAESHTGVA LLQYDREMEG AAAAADEGVP LQAALNAARA RRAIEGEDVV 
RIVNAREHNL KSLDVDIPHG KFNVITGVSG SGKSTLAFDI LFHEGQRRYL ESLNAYARSI 
VQPAGRPEVD AVYGIPPTVA IEQRLSRGGR KSTVATTSEV WHFLRLLYVK LGLQHCIHDG 
TPVTSQSVES IAAQLLRDHR GEHVGLLAPL VVNRKGVYTD LAKWAKARGS THLRVDGEFV 
TVDPWPKLDR FREHTIELPV ADIVVSPDNE AELRRRLDET LELGKGVMHL LAPLDGLHHA 
MQNDHSTAQV GAVKVLSVKR ACPVCGTSYP ELDPRMFSYN SKHGWCTTCV GTGVTLTREQ 
RAAYDDTVLA GDDRGREQTL PSDEQEPEGV GNEPCPDCHG TRLNPSARAV TFDAHPIVEV 
AQWTVSDTRR WIDALELTGR DAQIARDIVS EIGSRLAFLE EVGLGYLSLD RAAPSLSGGE 
AQRIRLAAQL GSNLQGVCYV LDEPTIGLHP RDNQILLDAL RKLGDKGNTL VVVEHDEDTI 
RRADQIIDVG PGAGKRGGTL VAQGAVADLA AQADSVTGRL LAQPMTHPLQ PRRSVSLPGK 
KGGEAVPEAW LTVHGARLHN LRDVTVGIPL ARLVAVTGVS GSGKSTLARD VLMTNLLDAV 
GRSVLSSPAT RRARKAAQQD APAANRRSSV LARSAPRPSL NVTHAWQGCE SLSGWEQIDR 
VLEVDQTPIG KTPRSCPATY IGVWDTIRKL FADTLEARAR GYTASRFSFN TGDGRCPACE 
GQGVRTIGMS FLPDVKVPCD VCHGQRFNPE TLAVTWRGRN IGDVLTMEID EAVEFFAPIS 
NIAHPLQLMK DVGLGYLTLG QPSPTLSGGE AQRIKLVTEL TKVRDDITRR GQKAPHTLYV 
LDEPTVGLHM ADVAKLIRVL HRLVDAGHSV VVIEHDLDVI AEADWIIDLG PEGGVGGGTI 
VAAAPPEGLV QVKASHTGQA LKPVLARAAS EDAEVEQQGA ARVG