| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen_5601 |
|---|
| Symbol | |
|---|
| ID | 4096789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia AU 1054 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008062 |
|---|
| Strand | + |
|---|
| Start bp | 121996 |
|---|
| End bp | 123423 |
|---|
| Gene Length | 1428 bp |
|---|
| Protein Length | 475 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638018877 |
|---|
| Product | RND efflux system, outer membrane lipoprotein, NodT |
|---|
| Protein accession | YP_625443 |
|---|
| Protein GI | 107028348 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGCA CACTGATCGC CCTTGTTTGC ACGGGCGTGC TGGCAGGCTG CACGCTGGAC
CCGACGTACC AAAGGCCGGC CGCACCGGTC GACGACACCT GGTCCACCGT GCCCGCGCTG
GCGCAGCCGA AGGCCGCGCA GAGCACGGCT GCGGCACCGC TGGGAGCCGA CCTCGGCTGG
CGCGATTTCT TCAAGGACCC GCGACTGCAA AAGCTGATCG AACTCGCGCT CGCGAACAAC
CGCGACATGC GCGTCGCCGC GCTCAACGTG GCGCAGTACG AAGCGCAGTA CCGCATTGCG
CGCGCCAACG TCGGACCGGC CATCAACGCA TCCGGCTCGG TCACGCGCGA ACGCGTGGCC
GGCTCCACGA GCGCATACAG TTCGAGCAGC GCGAGCGTGG GCCTCACGTC GTGGGAAATC
GACTTCTTCG GCCGCCTGCG CAGCCTCAAG CGTCAGGCGC TGGAGCAGTA CCTCGCCACG
GACGCCGCGC GCACCAGCAC GCAGATCAGC CTGATCGCGA CCGTCGCCAC CGACTATCTG
CAACTGCGCT CCGACGAGAC GTCGTTGCAG ATCGCGCAGA ACACCGTGGA TGCGGACCAG
CACACCTACG ACCTCACGGT GAGCATGATG AAAATGGGCA GCGCGTCGCT GCAGGACGTG
CGCCAGGCCG AAAATTCGCT GGCGAGCGCG CGGTCGAGTC TCGCCTCGTA CACGCGTGCG
GTCGCGCAGG ACCGCAACAA CCTGGTGGCC GAAATCGGTG CGCCGCTGCC CGACGATCTG
CCGCAAGGCG CTTCGCTGAT GGAAAGCGAG AACACGTTCG CGGACATCGG CGAAGGCGTG
CCGTCGGACC TGCTCGCGCG CCGGCCCGAC ATCGTCGAAG CCGAGCACAC GCTCAAGGCC
GCCAACGCCA ACATCGGCGC CGCGCGCGCC GCGTTCTTTC CGAAGATCGA GCTGACGGCT
TCCGCGGGCA CCACGAGCGG CAGCCTCTCG AACCTGTTCA AGGCGGGCAC GGGGGCGTGG
ACGTTTGCGC CGTCCATTTC GGTGCCCATC TTCGACTTCG GCTACAACCG CGCCACGCTG
GACGTGGCGA AGGTCGAGAA GGACATCGAC ATCGCCAACT ACGAAAAGGC CATCCAGACG
GCGTTCAAGG AAGTGTCGAA TGCACTCGCG GGACGCACCA CGTACGTCAC GCAGGTAGCC
GCGGATCGCG ACTACGTCAA CTCCGCGCAG CAGTACTACG ACCTCGCGCA GGCACGCTAC
CGCAGCGGCA CCGACAGCTT CCTGACCCTG CTGGACGCGC AGCGCACGCT CTACGCCGCG
CAACAGCAAC TGGTCACGGA CATGCTCGCC AAGCAGTCCA ATCTCGTCAC GCTGTACAAG
GTGCTGGGCG GCGGCTGGCG GGAAACGAGC GCGGTGGCGC AGCGGTAG
|
|---|
| Protein sequence | MKRTLIALVC TGVLAGCTLD PTYQRPAAPV DDTWSTVPAL AQPKAAQSTA AAPLGADLGW
RDFFKDPRLQ KLIELALANN RDMRVAALNV AQYEAQYRIA RANVGPAINA SGSVTRERVA
GSTSAYSSSS ASVGLTSWEI DFFGRLRSLK RQALEQYLAT DAARTSTQIS LIATVATDYL
QLRSDETSLQ IAQNTVDADQ HTYDLTVSMM KMGSASLQDV RQAENSLASA RSSLASYTRA
VAQDRNNLVA EIGAPLPDDL PQGASLMESE NTFADIGEGV PSDLLARRPD IVEAEHTLKA
ANANIGAARA AFFPKIELTA SAGTTSGSLS NLFKAGTGAW TFAPSISVPI FDFGYNRATL
DVAKVEKDID IANYEKAIQT AFKEVSNALA GRTTYVTQVA ADRDYVNSAQ QYYDLAQARY
RSGTDSFLTL LDAQRTLYAA QQQLVTDMLA KQSNLVTLYK VLGGGWRETS AVAQR
|
|---|
| |