Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen_5600 |
Symbol | |
ID | 4096788 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia AU 1054 |
Kingdom | Bacteria |
Replicon accession | NC_008062 |
Strand | + |
Start bp | 118802 |
End bp | 121999 |
Gene Length | 3198 bp |
Protein Length | 1065 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 638018876 |
Product | hydrophobe/amphiphile efflux-1 HAE1 |
Protein accession | YP_625442 |
Protein GI | 107028347 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAGAGT TCTTCATCAA GCGTCCCATT CTCGCGTGGG TCATGGCCAT CGTCATCATG CTGGTGGGCG CGGCGGCGGT CACGAGTCTT CCCGTCGCGC AGTACCCCAC CATCGCGCCG CCCTCGGTGC AGGTGACGGC CACTTACCCC GGCGCCTCCG CCGACACCGT CGCTGCAACC GTGACCCAGG TGATCGAGCA GAAGCTGAGC GGCATCGACA ACGTGCTGTA CATGTCGTCC ACGAGCAGTT CCGCCGGGCA GGCCACCATC ACGCTGACGT TCAATCCCGG CACGAATCCC GACATCGCGC AGGTACAGGT GCAGAACAAG GTGACGCAGG CCACGCCTAC CCTGCCCCAA ACGGTGCAGG AGCAAGGTGT GCAGGTCGCG AAGGCGTCGA CGAGCTTCCT CATGATCGTC GCGCTCTCGT CGCCGGGCGG CACCTGGAAT TCGGTGGATC TCGGCAACAT CATCGCGACC CGGATCGAAG ATCCGCTCGC GCAGTTGAAC GGCGCGGGCG ACGTGACGCT GTTCGGCGCA CAGCATGCGA TGCGCATCTG GCTCAACCCG GTGAAGCTGC ACAGCTTCGG ACTCACGCCC TCCGACGTGA CCACGGCCAT CACGAACCAG AACGTCGAGC TTTCCACGGG GCAGGTCGGC GGCTCGCCGG CAACGGATTC GCAGGCCATC AACGCGACCA TCCGCTCGTC GAGTCTGCTG ACGACCGCCG ACCAGTTCGC CGGCATCCTG CTGCGCGTGA ACAGCGACGG CTCGCGCGTG CTGCTGAAGG ACGTGGCGCG CGTGGAGGTG GGCGGCGACA GCTACGACAC CTCGTCGCGC CTGAACGGCA AGCCGGCATC CGCGCTCGCC ATCAAGCTCG CCACCGGCGC CAACGCGCTG GACGCAGCCA ACGCCGTGCG CGCGAAGCTC GCCGAGATCC AGCTGCAATT GCCGAAGGAC GTCGCGATCA GTTATCCGTA CGACACCACG CCGTTCGTTC GCATCTCGAT CGAAGAGGTC GTGAAGACGC TGTTCGAAGC GGTCGTACTG GTCTTCCTCG TGATGTACCT GTTCCTGCAG AACGTGCGCG CCACGCTGAT TCCGACCATC GTGGTGCCCG TTGCGCTGCT CGGCACGTTC GGTGTGATGT CGATGATCGG TTTTTCGATC AACGTCCTCT CGATGTTCGC GATGGTGCTC GCCATCGGCC TGCTCGTGGA CGACGCCATC GTGGTGGTGG AAAACGTCGA GCGCATCATG AGCGAGGAGA AGCTCGGCCC GAAGGAAGCC ACGCACAAGG CGATGGGGCA GATTACCGGC GCCCTGGTCG GCGTGACCAC CGTGCTCACC GCCGTCTTCA TTCCGATGGC GTTCTTCGCG GGCTCCACGG GCGCGATCTA CCGGCAGTTC TCCATCACCA TCGTCTCGGC GATGCTGCTG TCGGTCATGC TCGCGCTTAC GCTCACGCCG GCACTGTGCG CCACGCTGCT CAAGCGCGCC GACGTGGAGC ACCACGAAAA GCGCGGCTTC TTCGGCTGGT TCAACCGGTG GTTCGCCAAG AGCAATGCGG GCTACAGTTC CTCGCTCGCA CGCGTGGTCG CGCGGCCCGC GCGTTACATG CTTCTCTACG GCGCGATCGC CGGCGTCGTG GCGCTGCTCT ACGTCACGTT GCCCTCCTCG TTCCTGCCTG ACGAAGACCA GGGCTACTTC ATCGTGTCGA TCAGCGCGCC CGCGGGCGCG CCGGCCTCGC GTACGCTGAA GACGGTGGAG GCCGTGGAGC AGTACGTGCT GAAAGACGAG CCGGGCGTCA AGCAGGTCAT CGCCATCAAC GGCTTCAGCT TCAACGGCCA GGGGCAGAAC AACGCCATCG CGTTCGTGAC GCTCAAGGAC TGGAGCCTGC GCGGTTCGCG CGACAGCGCG TCGGCCATCA TCGCGCGCGC CAGCCAGCAT TTCGCCGGCA ATCGCGACGC GCGCATCTTC GTGCTGAATC CGCCCGCCAT TCAGGAACTG GGTACGCAAA GCGGCCTCGA CTTCGAGATA GAAGACCGCG GCGGCGCAGG CCACGACAAG CTGCTCGCGG TGCGCAACCA GTTTCTCGGC ATGGCGTCGA AGGAACCGAC GCTCGCGATG GTGCGCCCGT CCGGCCTTGA AGACACGCCG CAGCTGCAGG TGGACATCGA CCGCGAAAAA GCCAACGCGC TGGGGCTTTC CATCTCCGAC GTCAACGACA CGCTGCAGAC CGCGTTCGGT TCGTCCTACG TGAACAACTA CATCGACACG GGGCGCGTGC AGAAAGTCTA TGTGCAGTCG GACGCGCCGT ATCGCATGAT GCCTGCCGAC CTCGGCGACT GGTATGTGAA GGCAGGCAGC AGTTCGTCGG GTTCGTCGTC CTCGTCGTCC TCGAGCACCA CCACGAGCAC GACAGGCTAC GACGCCACGA TGGCGCCCTT CTCGTCGTTC GCAAAGAGCC ACTGGACGTT CGGGCCGCCA CAGATCGAGC GCTACAACCG GCAGCTCGCC GCGGGCATGT CGGCCGCCAC GCGGCCCGGC GTGAGCACCG GCGAGGCGAT GACGGCAGTC GAACAGCTTG CGCGCAAACT ACCGCCTGGC TTCGCCGTGG AATGGACGGG CCAGTCGTAT CAGGAGAAGC AGGCCGGCTC GCAAGCCACG GTGCTCTATG CGATCTCGCT CGTCGTCGTG TTCCTGTGCC TTGCGGGCCT CTACGAAAGC TGGTCGATTC CGCTTGCGGT GCTGCTCGTC GTGCCGCTCG GTGTGCTGGG CGCGTTACTG GCCGCTCACG GGCGCGGGCT TTCGAACGAC ATCTATTTCA AGGTGGGGTT GCTGGCCACT ATCGGTCTGT CCACGAAGAA CGCCATCCTG ATCGTCGAGT TCGCGAAGGA TCTGCAGGCG CAGGGGCACA GCCTCGTGGA CGCCGTACTC GAAGCCGCCC ACATGCGGCT GCGCCCCATT CTCATGACTT CGCTCGCGTT CGTGTTCGGC GTGCTGCCGC TCGTCATCAG TACGGGGGCC GGCGCCGGCG CACGCCACGC GATCGGCACG GGCGTGACGG GCGGCATGAT CGCGGCCACG GTGCTCGCCA TCTTCTTCGT ACCGGTCTTC TTCGTCGTGG TGCGCAGACT GTTCAACGAA CACGGTCACA CCACGGACTC CGCCGACATC AACGAGGGCA ACGCATGA
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Protein sequence | MAEFFIKRPI LAWVMAIVIM LVGAAAVTSL PVAQYPTIAP PSVQVTATYP GASADTVAAT VTQVIEQKLS GIDNVLYMSS TSSSAGQATI TLTFNPGTNP DIAQVQVQNK VTQATPTLPQ TVQEQGVQVA KASTSFLMIV ALSSPGGTWN SVDLGNIIAT RIEDPLAQLN GAGDVTLFGA QHAMRIWLNP VKLHSFGLTP SDVTTAITNQ NVELSTGQVG GSPATDSQAI NATIRSSSLL TTADQFAGIL LRVNSDGSRV LLKDVARVEV GGDSYDTSSR LNGKPASALA IKLATGANAL DAANAVRAKL AEIQLQLPKD VAISYPYDTT PFVRISIEEV VKTLFEAVVL VFLVMYLFLQ NVRATLIPTI VVPVALLGTF GVMSMIGFSI NVLSMFAMVL AIGLLVDDAI VVVENVERIM SEEKLGPKEA THKAMGQITG ALVGVTTVLT AVFIPMAFFA GSTGAIYRQF SITIVSAMLL SVMLALTLTP ALCATLLKRA DVEHHEKRGF FGWFNRWFAK SNAGYSSSLA RVVARPARYM LLYGAIAGVV ALLYVTLPSS FLPDEDQGYF IVSISAPAGA PASRTLKTVE AVEQYVLKDE PGVKQVIAIN GFSFNGQGQN NAIAFVTLKD WSLRGSRDSA SAIIARASQH FAGNRDARIF VLNPPAIQEL GTQSGLDFEI EDRGGAGHDK LLAVRNQFLG MASKEPTLAM VRPSGLEDTP QLQVDIDREK ANALGLSISD VNDTLQTAFG SSYVNNYIDT GRVQKVYVQS DAPYRMMPAD LGDWYVKAGS SSSGSSSSSS SSTTTSTTGY DATMAPFSSF AKSHWTFGPP QIERYNRQLA AGMSAATRPG VSTGEAMTAV EQLARKLPPG FAVEWTGQSY QEKQAGSQAT VLYAISLVVV FLCLAGLYES WSIPLAVLLV VPLGVLGALL AAHGRGLSND IYFKVGLLAT IGLSTKNAIL IVEFAKDLQA QGHSLVDAVL EAAHMRLRPI LMTSLAFVFG VLPLVISTGA GAGARHAIGT GVTGGMIAAT VLAIFFVPVF FVVVRRLFNE HGHTTDSADI NEGNA
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