Gene Bcen_5600 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen_5600 
Symbol 
ID4096788 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia AU 1054 
KingdomBacteria 
Replicon accessionNC_008062 
Strand
Start bp118802 
End bp121999 
Gene Length3198 bp 
Protein Length1065 aa 
Translation table11 
GC content65% 
IMG OID638018876 
Producthydrophobe/amphiphile efflux-1 HAE1 
Protein accessionYP_625442 
Protein GI107028347 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAGAGT TCTTCATCAA GCGTCCCATT CTCGCGTGGG TCATGGCCAT CGTCATCATG 
CTGGTGGGCG CGGCGGCGGT CACGAGTCTT CCCGTCGCGC AGTACCCCAC CATCGCGCCG
CCCTCGGTGC AGGTGACGGC CACTTACCCC GGCGCCTCCG CCGACACCGT CGCTGCAACC
GTGACCCAGG TGATCGAGCA GAAGCTGAGC GGCATCGACA ACGTGCTGTA CATGTCGTCC
ACGAGCAGTT CCGCCGGGCA GGCCACCATC ACGCTGACGT TCAATCCCGG CACGAATCCC
GACATCGCGC AGGTACAGGT GCAGAACAAG GTGACGCAGG CCACGCCTAC CCTGCCCCAA
ACGGTGCAGG AGCAAGGTGT GCAGGTCGCG AAGGCGTCGA CGAGCTTCCT CATGATCGTC
GCGCTCTCGT CGCCGGGCGG CACCTGGAAT TCGGTGGATC TCGGCAACAT CATCGCGACC
CGGATCGAAG ATCCGCTCGC GCAGTTGAAC GGCGCGGGCG ACGTGACGCT GTTCGGCGCA
CAGCATGCGA TGCGCATCTG GCTCAACCCG GTGAAGCTGC ACAGCTTCGG ACTCACGCCC
TCCGACGTGA CCACGGCCAT CACGAACCAG AACGTCGAGC TTTCCACGGG GCAGGTCGGC
GGCTCGCCGG CAACGGATTC GCAGGCCATC AACGCGACCA TCCGCTCGTC GAGTCTGCTG
ACGACCGCCG ACCAGTTCGC CGGCATCCTG CTGCGCGTGA ACAGCGACGG CTCGCGCGTG
CTGCTGAAGG ACGTGGCGCG CGTGGAGGTG GGCGGCGACA GCTACGACAC CTCGTCGCGC
CTGAACGGCA AGCCGGCATC CGCGCTCGCC ATCAAGCTCG CCACCGGCGC CAACGCGCTG
GACGCAGCCA ACGCCGTGCG CGCGAAGCTC GCCGAGATCC AGCTGCAATT GCCGAAGGAC
GTCGCGATCA GTTATCCGTA CGACACCACG CCGTTCGTTC GCATCTCGAT CGAAGAGGTC
GTGAAGACGC TGTTCGAAGC GGTCGTACTG GTCTTCCTCG TGATGTACCT GTTCCTGCAG
AACGTGCGCG CCACGCTGAT TCCGACCATC GTGGTGCCCG TTGCGCTGCT CGGCACGTTC
GGTGTGATGT CGATGATCGG TTTTTCGATC AACGTCCTCT CGATGTTCGC GATGGTGCTC
GCCATCGGCC TGCTCGTGGA CGACGCCATC GTGGTGGTGG AAAACGTCGA GCGCATCATG
AGCGAGGAGA AGCTCGGCCC GAAGGAAGCC ACGCACAAGG CGATGGGGCA GATTACCGGC
GCCCTGGTCG GCGTGACCAC CGTGCTCACC GCCGTCTTCA TTCCGATGGC GTTCTTCGCG
GGCTCCACGG GCGCGATCTA CCGGCAGTTC TCCATCACCA TCGTCTCGGC GATGCTGCTG
TCGGTCATGC TCGCGCTTAC GCTCACGCCG GCACTGTGCG CCACGCTGCT CAAGCGCGCC
GACGTGGAGC ACCACGAAAA GCGCGGCTTC TTCGGCTGGT TCAACCGGTG GTTCGCCAAG
AGCAATGCGG GCTACAGTTC CTCGCTCGCA CGCGTGGTCG CGCGGCCCGC GCGTTACATG
CTTCTCTACG GCGCGATCGC CGGCGTCGTG GCGCTGCTCT ACGTCACGTT GCCCTCCTCG
TTCCTGCCTG ACGAAGACCA GGGCTACTTC ATCGTGTCGA TCAGCGCGCC CGCGGGCGCG
CCGGCCTCGC GTACGCTGAA GACGGTGGAG GCCGTGGAGC AGTACGTGCT GAAAGACGAG
CCGGGCGTCA AGCAGGTCAT CGCCATCAAC GGCTTCAGCT TCAACGGCCA GGGGCAGAAC
AACGCCATCG CGTTCGTGAC GCTCAAGGAC TGGAGCCTGC GCGGTTCGCG CGACAGCGCG
TCGGCCATCA TCGCGCGCGC CAGCCAGCAT TTCGCCGGCA ATCGCGACGC GCGCATCTTC
GTGCTGAATC CGCCCGCCAT TCAGGAACTG GGTACGCAAA GCGGCCTCGA CTTCGAGATA
GAAGACCGCG GCGGCGCAGG CCACGACAAG CTGCTCGCGG TGCGCAACCA GTTTCTCGGC
ATGGCGTCGA AGGAACCGAC GCTCGCGATG GTGCGCCCGT CCGGCCTTGA AGACACGCCG
CAGCTGCAGG TGGACATCGA CCGCGAAAAA GCCAACGCGC TGGGGCTTTC CATCTCCGAC
GTCAACGACA CGCTGCAGAC CGCGTTCGGT TCGTCCTACG TGAACAACTA CATCGACACG
GGGCGCGTGC AGAAAGTCTA TGTGCAGTCG GACGCGCCGT ATCGCATGAT GCCTGCCGAC
CTCGGCGACT GGTATGTGAA GGCAGGCAGC AGTTCGTCGG GTTCGTCGTC CTCGTCGTCC
TCGAGCACCA CCACGAGCAC GACAGGCTAC GACGCCACGA TGGCGCCCTT CTCGTCGTTC
GCAAAGAGCC ACTGGACGTT CGGGCCGCCA CAGATCGAGC GCTACAACCG GCAGCTCGCC
GCGGGCATGT CGGCCGCCAC GCGGCCCGGC GTGAGCACCG GCGAGGCGAT GACGGCAGTC
GAACAGCTTG CGCGCAAACT ACCGCCTGGC TTCGCCGTGG AATGGACGGG CCAGTCGTAT
CAGGAGAAGC AGGCCGGCTC GCAAGCCACG GTGCTCTATG CGATCTCGCT CGTCGTCGTG
TTCCTGTGCC TTGCGGGCCT CTACGAAAGC TGGTCGATTC CGCTTGCGGT GCTGCTCGTC
GTGCCGCTCG GTGTGCTGGG CGCGTTACTG GCCGCTCACG GGCGCGGGCT TTCGAACGAC
ATCTATTTCA AGGTGGGGTT GCTGGCCACT ATCGGTCTGT CCACGAAGAA CGCCATCCTG
ATCGTCGAGT TCGCGAAGGA TCTGCAGGCG CAGGGGCACA GCCTCGTGGA CGCCGTACTC
GAAGCCGCCC ACATGCGGCT GCGCCCCATT CTCATGACTT CGCTCGCGTT CGTGTTCGGC
GTGCTGCCGC TCGTCATCAG TACGGGGGCC GGCGCCGGCG CACGCCACGC GATCGGCACG
GGCGTGACGG GCGGCATGAT CGCGGCCACG GTGCTCGCCA TCTTCTTCGT ACCGGTCTTC
TTCGTCGTGG TGCGCAGACT GTTCAACGAA CACGGTCACA CCACGGACTC CGCCGACATC
AACGAGGGCA ACGCATGA
 
Protein sequence
MAEFFIKRPI LAWVMAIVIM LVGAAAVTSL PVAQYPTIAP PSVQVTATYP GASADTVAAT 
VTQVIEQKLS GIDNVLYMSS TSSSAGQATI TLTFNPGTNP DIAQVQVQNK VTQATPTLPQ
TVQEQGVQVA KASTSFLMIV ALSSPGGTWN SVDLGNIIAT RIEDPLAQLN GAGDVTLFGA
QHAMRIWLNP VKLHSFGLTP SDVTTAITNQ NVELSTGQVG GSPATDSQAI NATIRSSSLL
TTADQFAGIL LRVNSDGSRV LLKDVARVEV GGDSYDTSSR LNGKPASALA IKLATGANAL
DAANAVRAKL AEIQLQLPKD VAISYPYDTT PFVRISIEEV VKTLFEAVVL VFLVMYLFLQ
NVRATLIPTI VVPVALLGTF GVMSMIGFSI NVLSMFAMVL AIGLLVDDAI VVVENVERIM
SEEKLGPKEA THKAMGQITG ALVGVTTVLT AVFIPMAFFA GSTGAIYRQF SITIVSAMLL
SVMLALTLTP ALCATLLKRA DVEHHEKRGF FGWFNRWFAK SNAGYSSSLA RVVARPARYM
LLYGAIAGVV ALLYVTLPSS FLPDEDQGYF IVSISAPAGA PASRTLKTVE AVEQYVLKDE
PGVKQVIAIN GFSFNGQGQN NAIAFVTLKD WSLRGSRDSA SAIIARASQH FAGNRDARIF
VLNPPAIQEL GTQSGLDFEI EDRGGAGHDK LLAVRNQFLG MASKEPTLAM VRPSGLEDTP
QLQVDIDREK ANALGLSISD VNDTLQTAFG SSYVNNYIDT GRVQKVYVQS DAPYRMMPAD
LGDWYVKAGS SSSGSSSSSS SSTTTSTTGY DATMAPFSSF AKSHWTFGPP QIERYNRQLA
AGMSAATRPG VSTGEAMTAV EQLARKLPPG FAVEWTGQSY QEKQAGSQAT VLYAISLVVV
FLCLAGLYES WSIPLAVLLV VPLGVLGALL AAHGRGLSND IYFKVGLLAT IGLSTKNAIL
IVEFAKDLQA QGHSLVDAVL EAAHMRLRPI LMTSLAFVFG VLPLVISTGA GAGARHAIGT
GVTGGMIAAT VLAIFFVPVF FVVVRRLFNE HGHTTDSADI NEGNA