| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen_5468 |
|---|
| Symbol | |
|---|
| ID | 4094526 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia AU 1054 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008061 |
|---|
| Strand | + |
|---|
| Start bp | 2772508 |
|---|
| End bp | 2773659 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638018748 |
|---|
| Product | porin |
|---|
| Protein accession | YP_625314 |
|---|
| Protein GI | 107027803 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00161783 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTCGA ATCAGGCCAG CCAGCATTCC CGCCCGAAAC CCCGCTTCAT GCTCGGCGCC
GTCACCGTCG CGAGCGCGGC CTCGTGGTGC GTTGCCGCGC ATGCGCAAAG CAGCGTCACG
CTGTACGGCA TTGCCGATGT CGGCGTCGAA CACGTCAACA ATACGAATAC CGGCGGCGCG
CAGACGCGCG AAGCGTCGGG CAATCTGTCC GGTTCGCGCT GGGGACTGAA GGGCGTCGAG
GATCTCGGCG GCGGCATGAA GGCCATTTTC CAGCTGGAAA ACGGCTTCAA CATCAATGAC
GGCACGACCG CGCAGTCGAC GAAAGGTCTC GGTTCGAACG CCGCCACGAC GTCGCGGATT
TTCGGCCGGC AGGCGTGGGT CGGGCTGGCG TACCGGGGCC AACAACTCAC GTTCGGCCGC
CAGAACGCGC TTTTTTACGA ACAGGCCGTG GCCTTCGACC CGATGGGCGC GTCGTCGCGA
TACTCGGTGC TGTCGGTCGA CTACGCGGCG GCCGCGCGCA TCGACAACTC GGTGAAGTAC
ACCGGCGTGT TCGGCCCACT GACGGCGCAG GCCATGTATA GCACCCGCTA CGACACCGGG
TACGGCGCCG AGGTGCCGGG CGCGCAACTC ACCGGCCGCT TCTTCAGCGC GGCGCTGACT
TTCTCGCAAG GGCCGCTCGC CGCGAGCGTG TCGTACGAGC AGCGCAACAG CAACACCGTC
GCGACCAACA CGGGCACCGA GCGGCGCGCC ACGGCCGCCG CGTCGTATGC GATCGGACCG
GTGAAGGGAT TCGCTGGTTA TCGCTACCTT CGTGCGTCGA ATGCGTTCCT GCCGGCGAAC
CCGATCCGTG TCGCGAACGG CGCCGAAGCC AGCACGGCGA ACCTGTACTG GGCCGGCGCG
CAATACGCGG TGTCGCCCGC GTTCGTGGTC ACGGCGACGG CCTATTACCA GGACGTGCAT
TCGACGAGTG CCGACCCGTG GCTCGCCGTG CTCTGTGCGG ACTATCTGCT GTCGAAGCGC
ACCGATATCT ATGCGACGGC GGGTTTCGCG CGCAACAAGG GCGGCTCCGC GCTCGGCGTG
AACGGCTATG GCACGGTCGC GCCCGATCAC AACCAGACGG GTGTGGTGAT CGGCATGCGC
CAGAAGTTCT GA
|
|---|
| Protein sequence | MLSNQASQHS RPKPRFMLGA VTVASAASWC VAAHAQSSVT LYGIADVGVE HVNNTNTGGA
QTREASGNLS GSRWGLKGVE DLGGGMKAIF QLENGFNIND GTTAQSTKGL GSNAATTSRI
FGRQAWVGLA YRGQQLTFGR QNALFYEQAV AFDPMGASSR YSVLSVDYAA AARIDNSVKY
TGVFGPLTAQ AMYSTRYDTG YGAEVPGAQL TGRFFSAALT FSQGPLAASV SYEQRNSNTV
ATNTGTERRA TAAASYAIGP VKGFAGYRYL RASNAFLPAN PIRVANGAEA STANLYWAGA
QYAVSPAFVV TATAYYQDVH STSADPWLAV LCADYLLSKR TDIYATAGFA RNKGGSALGV
NGYGTVAPDH NQTGVVIGMR QKF
|
|---|
| |