| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen_5316 |
|---|
| Symbol | |
|---|
| ID | 4094393 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia AU 1054 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008061 |
|---|
| Strand | - |
|---|
| Start bp | 2612835 |
|---|
| End bp | 2614355 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638018597 |
|---|
| Product | amino acid/peptide transporter |
|---|
| Protein accession | YP_625163 |
|---|
| Protein GI | 107027652 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3104] Dipeptide/tripeptide permease |
|---|
| TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.179594 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGCACG CACCTGTTTC ACAGACCCGA TCGTTTACGA CGGTCTTCCT CATCGAAATG
TGGGAGCGCT TCGGCTACTA CGGCATGGCC GCGCTCCTGG TCCTCTTCAT GGTCGACCGG
CTCGGCTTCA CCGACAGCCA CGCGAACCTG ACCTGGGGTG CATTCACCGC ACTCGTCTAC
GCCGCGCCGT CGATCGGCGG CTGGATCGGC GACAAGGTGC TCGGCGCCCG CCGCACGATG
ATCATCGGCG CGTCCGTGCT GTGCGCCGGC TACCTGATGC TCGCGGTGCC GAACGATCAC
CTCGCGTACA TGTACGCGTC GCTCGGCGTG ATCGTCGTCG GCAACGGCCT GTTCAAGGCC
AACGCAGCGA ACCTCGTGCG CCGCATCTAC GAAGGCGACG ACGCGCGCAT CGACAGCGCG
TTCACGATCT ACTACATGGC GGTCAACATC GGCTCGACGG TGTCGATGCT CGCGACGCCG
TGGATCAAGG ATCACTGGGG CTGGCACACC GCGTTCGCGG TCTGCTGCGG CGGCATGCTG
CTCGCGATCC TCAATTTCAT GCTGATGCAC CGCACGCTCG CGCACGTCGG CTCGCAGCCG
GACGACGAGC CGATCCGCTG GAAGCGCCTC GGCGCGGTCG CGGCCGGCGG CGTCGCGCTC
GCGCTGATCA CGCTGTACGT GCTGCAGCAC AAGCAGCTCG CGGTCGCCAG CGTGTGGATG
GCGGCATTCG CGATCCTCGC GATCTTCGCG TACATGATCG CGAAGTCGGA GCGCTCGGAG
CGCGCCGGCC TGATCGCGGC GCTCGTGCTG ATCGGCCAGG TGATCCTGTT CTTCATCTTC
TACGTGCAGA TGTCGACGTC GCTGACGCTG TTCGCGCTGC GCAACGTCGA CCCGCGTTTC
ATGCTGTTCG GCACGACGCT GTTCACGTGG AGCGCCGCGC AGTTCCAGGC GCTGAACCCG
ATCTGGATCA TGCTGCTGAG CCCGGTGCTC GTGTGGGTCT ACAACGCCGT CGCGAAGGGC
GGCCGCGACC TGCCGGTCGC CGCGAAGTAC GCGCTCGGTT TCGGCGCGGT GGCAGCCGGC
TACCTGGTGT TCACGATCAG CGGCCGCTAC GCGGTCGACG GCCGTGTGTC GTCGTGGTTC
ATGGTGTGGG GTTACGGCCT GTACTCGCTC GGCGAACTGC TGGTGAGCGG CCTCGGCCTC
GCGATGATCG CCCGCTACGT GCCGGCGCGC ATGAGCGGCT TCATGATGGG TGCGTATTTC
GTCGCGACGG GCGTGTCGCA GTATCTGGGC AGCGTCGTCG CAAACTTCGC GCAGATGCCG
TCGCACGAAC TGCCGGCCAC CGAGTCGCTG CCGCTCTACC TGTCGCTGTT CGAGAAGCTC
GGCTGGCTCG CCGCGATCGG CATGCTGCTC GCGCTGCTGC TGCTGCCGCT GATGAACCGC
CTGTCGCGCC AGCATCAGCG CTGCACGGAA GAGCGCCGCG AAGAAGCGTT GCAGGCGCAA
GCAGCGGCCG CCGCGCAGTA A
|
|---|
| Protein sequence | MMHAPVSQTR SFTTVFLIEM WERFGYYGMA ALLVLFMVDR LGFTDSHANL TWGAFTALVY
AAPSIGGWIG DKVLGARRTM IIGASVLCAG YLMLAVPNDH LAYMYASLGV IVVGNGLFKA
NAANLVRRIY EGDDARIDSA FTIYYMAVNI GSTVSMLATP WIKDHWGWHT AFAVCCGGML
LAILNFMLMH RTLAHVGSQP DDEPIRWKRL GAVAAGGVAL ALITLYVLQH KQLAVASVWM
AAFAILAIFA YMIAKSERSE RAGLIAALVL IGQVILFFIF YVQMSTSLTL FALRNVDPRF
MLFGTTLFTW SAAQFQALNP IWIMLLSPVL VWVYNAVAKG GRDLPVAAKY ALGFGAVAAG
YLVFTISGRY AVDGRVSSWF MVWGYGLYSL GELLVSGLGL AMIARYVPAR MSGFMMGAYF
VATGVSQYLG SVVANFAQMP SHELPATESL PLYLSLFEKL GWLAAIGMLL ALLLLPLMNR
LSRQHQRCTE ERREEALQAQ AAAAAQ
|
|---|
| |