| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen_5180 |
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| Symbol | |
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| ID | 4095207 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia AU 1054 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008061 |
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| Strand | + |
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| Start bp | 2464422 |
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| End bp | 2466395 |
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| Gene Length | 1974 bp |
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| Protein Length | 657 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638018461 |
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| Product | squalene cyclase |
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| Protein accession | YP_625027 |
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| Protein GI | 107027516 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0421505 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGATC TCACCGAAAT GGCTACCTTG TCCGCCGGCG CCGTGCCGGC CGGCGTCGAC
GCGGCTGTCG CGCGTGCGAC CGACGCGCTG CTCGCCGCGC AGCAAGCGGA TGGCCACTGG
GTCTACGAAC TCGAGGCGGA TTCGACGATT CCCGCCGAAT ACGTGCTGCT CGTCCACTAT
CTTGGCGAGA CGCCGAACCT CGAGCTCGAA CAGAAGATCG GCAAGTATCT GCGCCGCATC
CAGCAGGCCG ACGGCGGCTG GCCGCTGTTC ACCGACGGCG CGCCGAACAT CAGCGCGAGC
GTGAAGGCGT ATTTCGCGCT GAAGGTGATC GGCGACGACG AGAACGCCGA GCACATGCAG
CGCGCGCGCC GTGCCATCCA TGCGATGGGC GGCGCCGAGA TGTCGAACGT GTTCACGCGC
ATCCAGCTCG CGCTGTACGG TGCGATTCCG TGGCGCGCGG TGCCGATGAT GCCGGTCGAG
ATCATGCTGC TGCCGCAGTG GTTCCCGTTC CACCTGTCGA AGGTGTCGTA CTGGGCGCGC
ACCGTGATCG TGCCGCTGCT CGTGCTGAAC GCGAAGCGTC CGCTCGCGAA GAACCCGCGC
GGCGTGCGCA TCGACGAGCT GTTCATCGAT CCGCCCGTCA ACGCCGGGCT GCTGCCGCGC
CAGGGCCATC AGAGCGCGGG CTGGTTCGCG TTTTTCCGCG TGGTCGACCA TGCGCTGCGC
GCGGTCGACG GCCTGTTCCC GAGCTATACG CGCGAACGCG CGATCCGTCA GGCCGTGTCG
TTCGTCGACG AGCGCCTGAA CGGCGAGGAC GGCCTCGGCG CGATCTATCC GGCGATGGCC
AACGCGGTGA TGATGTACGA CGTGCTCGGC TATGCGGAAG ATCATCCGAA CCGTGCGATC
GCGCGCAAGG CGCTCGAGAA GCTGCTCGTC GTGCACGACG ACGAGGCGTA TTGCCAGCCG
TGCCTGTCGC CCGTGTGGGA TACGTCGCTC GTCGCGCATG CGCTGCTCGA GACCGGCGAT
GCGCGTGCCG AGGAAGCCGT GCTGCGCGGC CTCGAATGGC TGCGCCCGCT GCAGATCCTC
GACGTGCGCG GCGACTGGAT CTCGCGCCGC CCGAACGTGC GGCCCGGCGG CTGGGCGTTC
CAGTACGCGA ACGCGCACTA CCCTGACGTC GACGATACGG CCGTGGTCGT GATGGCGATG
GATCGCGCGC AAAAGCTCAA GCAATCGGAC ACGTATCGCG AATCGATGGC GCGGGCGCGC
GAATGGGTCG TCGGCATGCA GAGCAGCGAC GGCGGCTGGG GCGCGTTCGA ACCGGAAAAC
ACGCAGTACT ACCTGAACAA CATCCCGTTC TCCGATCACG GCGCGCTGCT CGATCCGCCG
ACGGCCGACG TGTCGGGCCG CTGCCTGTCG ATGCTGTCGC AGCTCGGCGA GACGCCGCTG
AACAGCGAGC CGGCCCGCCG CGCGCTCGAC TACATGCTGA AGGAACAGGA GCCGGACGGC
AGCTGGTACG GCCGTTGGGG GATGAACTAC GTGTACGGCA CGTGGACGGC GCTGTGCTCG
CTGAATGCGG CCGGCCTGAC GCCGGACGAC CCGCGCATGA AGCGCGCCGC GCAGTGGCTG
CTGTCGATCC AGAACAAGGA CGGCGGCTGG GGCGAGGACG GCGACAGCTA CAAGCTGAAC
TACCGCGGTT ACGAGCAGGC GCCGAGCACG GCGTCGCAGA CGGCCTGGGC GCTGCTCGGC
CTGATGGCGG CCGGCGAAGT GAACAACCCG GCCGTGGCGC GCGGCGTCGA CTACCTCGTC
GCTCAGCAGA ACGAAGAAGG GCTGTGGGAC GAGACGCGCT TCACGGCAAC GGGCTTCCCG
CGCGTGTTCT ACCTGCGCTA CCACGGTTAT CGCAAGTTCT TCCCGCTGTG GGCGCTGGCG
CGCTACCGCA ACCTGAAGCG CGCGAACGCG ACGCGCGTGA CGGTCGGGAT GTAA
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| Protein sequence | MNDLTEMATL SAGAVPAGVD AAVARATDAL LAAQQADGHW VYELEADSTI PAEYVLLVHY
LGETPNLELE QKIGKYLRRI QQADGGWPLF TDGAPNISAS VKAYFALKVI GDDENAEHMQ
RARRAIHAMG GAEMSNVFTR IQLALYGAIP WRAVPMMPVE IMLLPQWFPF HLSKVSYWAR
TVIVPLLVLN AKRPLAKNPR GVRIDELFID PPVNAGLLPR QGHQSAGWFA FFRVVDHALR
AVDGLFPSYT RERAIRQAVS FVDERLNGED GLGAIYPAMA NAVMMYDVLG YAEDHPNRAI
ARKALEKLLV VHDDEAYCQP CLSPVWDTSL VAHALLETGD ARAEEAVLRG LEWLRPLQIL
DVRGDWISRR PNVRPGGWAF QYANAHYPDV DDTAVVVMAM DRAQKLKQSD TYRESMARAR
EWVVGMQSSD GGWGAFEPEN TQYYLNNIPF SDHGALLDPP TADVSGRCLS MLSQLGETPL
NSEPARRALD YMLKEQEPDG SWYGRWGMNY VYGTWTALCS LNAAGLTPDD PRMKRAAQWL
LSIQNKDGGW GEDGDSYKLN YRGYEQAPST ASQTAWALLG LMAAGEVNNP AVARGVDYLV
AQQNEEGLWD ETRFTATGFP RVFYLRYHGY RKFFPLWALA RYRNLKRANA TRVTVGM
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