| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen_4684 |
|---|
| Symbol | |
|---|
| ID | 4094112 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia AU 1054 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008061 |
|---|
| Strand | - |
|---|
| Start bp | 1947889 |
|---|
| End bp | 1951101 |
|---|
| Gene Length | 3213 bp |
|---|
| Protein Length | 1070 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638017971 |
|---|
| Product | heavy metal efflux pump CzcA |
|---|
| Protein accession | YP_624537 |
|---|
| Protein GI | 107027026 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGAGC GCCTGATCCG CTTTGCGATT GCGCATCGCT GGCTGGTGAT GCTGGCGATC
GCGGCCGTGG CCGCGCTCGG CGTGTTCAGC TACCAGCGGC TGCCGATCGA CGCGGTGCCC
GACATCACGA ACGTGCAGGT GCAGATCAAC ACGTCCGCGC CCGGCTACTC GCCGCTCGAG
GCCGAGCAGC GCATCACCTA TCCGGTCGAG ACCGTGATGG CCGGGCTGCC GGGGCTGGAG
CAGACGCGCT CGATCTCGCG CTACGGGCTG TCGCAGGTCA CCGTGATCTT CAAGGACGGC
ACCGACATCT ACTTCGCGCG GCAGCTCGTC AACGAGCGCA TCCAGGAAGC GAAGGACAAG
CTGCCGCCCG GCATCGCGCC CGCGATGGGG CCGACGTCGA CCGGCCTCGG CGAGATCTAC
CTGTGGACCG TCGAGGCCGA CGCCAACGCG CGCAAGCCCG ACGGCACGCG CTATACGGCG
GCCGACCTGC GCGAGCTGCA GGACTGGGTC GTGCGGCCGC AACTGCGCAA CGTGCGCGGC
GTGACCGAGG TCAACTCGAT CGGCGGCTAC GTGAAGGAAT ACCGCGTCGC GCCGAATCCG
GCGAAGCTGA TGTCGTACGG GCTGACGCTT GCCGACGTCG TGCGCGCGCT GGAGCGCAAC
AACGACAACG TCGGCGCCGG CTACATCGAA AAGCGCGGCG AGCAGTATCT GGTGCGCGTG
CCGGGCCAGG CGCGCACCGT CGACGACATC GCGAACATCG TGCTGACCAA CGTGGGCGGC
GTGCCGGTGC GGATGAAGGA CGTCGGCGTG GTCGACATCG GCCGCGAACT GCGCACCGGC
GCCGCGACGT CGAACGGCGA GGAAGTCGTG CTCGGCACGG TCTTCATGCT GATGGGCGAG
AACAGCCGGA CGGTGTCGAA GGCCGTCGCC GCGAAGATGG AGGACGTGAA CCGCACGCTG
CCGGCCGGCG TGAAGGCGAT TCCGGTGTAC GACCGCACGG TGCTGGTCGA GAAGGCCGTC
GCCACCGTGA AGAAGAACCT GCTCGAAGGC GCGGTGCTCG TGATCGCCGT GCTGTTCCTG
TTTCTCGGCA ACATCCGCGC GGCGCTGATC ACCGCGCTCG TGATCCCGCT GTCGATGCTG
ATGACCTTCA CCGGCATGGT CAACGCGAAG GTGAGCGCGA ACCTGATGAG CCTCGGCGCG
CTCGACTTCG GGATCATCGT CGACGGCGCG GTGGTGATCG TCGAGAACTG CGTGCGGCGG
CTCGCGCATG CGCAGTCGGC AGCCGGCCGG CCGCTCACGC GCGACGAGCG CTTTGCCGAA
GTGTTCGGCG CATCGCAGGA GGCGCGCCGA GCGCTGATCT TCGGGCAACT GATCATCATG
GTCGTGTACC TGCCGATCTT TGCGCTGACC GGCGTCGAAG GCAAGATGTT CCACCCGATG
GCGATCACCG TCGTAATGGC GCTCGCCGCC GCGATGGTGC TGACCGTCAC GTTCATTCCG
GCGGCCGTCG CGTTGTTCAT CGGCGAGCGG GTCGAGGAGA AGGAGAACCG GTTGATGGGC
TGGGCGCGGC GAGCGTACGA ACCGGTGCTC GCCGCGTTCA TGACGCGTCC GGCGCGCGTG
ATGATCGGGG CGGGCGCGAT CGTGCTGGTC ACGCTAGGGC TCGCGACGCG GCTCGGCAGC
GAGTTCATTC CGAGCCTCAA CGAGGGCGAT CTTGCCGTGT CCGCGCTGCG GATTCCCGGC
ACGAGCCTGT CGCAGTCGGT CGAGATGCAG AAGTCGATCG AGAAGACGCT GAAGGCGCGC
TTCCCCGAGA TCGAGCGCGT GTTCGCGCGC ACCGGGACGG CCGAGATCGC GGCCGACCCG
ATGCCGCCGA ACCTGTCGGA CGGCTACATC ATGCTGAAGC CGGCCGACAC GTGGCCCGAC
CCGAAGAAGC CGCGCGACCA GCTCGTGCGG GAGATCGAGG AAGCGCTCGC CGAGCTGCCG
GGCAACGCGT ACGAGTTCTC GCAGCCGATC CAGCTGCGCT TCAACGAACT GATCTCGGGC
GTGCGCAGCG ACGTCGCCGT GAAGATCTTC GGCGACGACA TGGCCGTGCT GAACCAGACC
GGCGAGCAGA TCGCGGCCGC GTTGCAGAAG GTGCCGGGCG CGTCGGAGGT GAAGGTCGAG
CAGACCACGG GCCTGCCGGT GCTGACCGTC AACCTCGACC GCGACAAGCT CGCGCGCTAC
GGCGTGAGCG TCGCCGATCT CCAGGATTCG GTGGCCGCGG CCGTCGGCGG GCAGAAGGCC
GGCACGCTGT TCCAGGGCGA CCGCCGCTTC GACATTGTCG TGCGGCTGCC CGACGAACTG
CGCTCCGACA TCGAGGCGAT CAAGCGGCTG CCGATCGCGC TGCCCGCGCC GGCCGCCGGC
GCCAGCGCGC CGCTCGCGGC GGCGCCGTAC GTGCCGCTCG CGGAGCTCGC GACGATCGAC
GTGGCCCCCG GCCCGAACCA GATCAGCCGC GAGGACGGCA AGCGGCGGGT GGTCGTCAGC
GCGAACGTGC GCGGCCGCGA CGTCGGTTCG TTCGTCGCCG ATGCGCGCGA GCAGTTGCAG
CAGGACGTGC GCGTGCCGGC CGGGTACTGG GTGTCGTGGG GCGGGCAGTT CGAGCAGTTG
CAAAGCGCGA GCGAGCGCCT GAAGCTCGTC GTGCCGCTCG CGCTGTTCAT GGTGTTCGTG
CTGCTGTTCG TGATGTTCAA CAACGTGAAG GACGGGCTGC TGGTGTTTAC CGGCATTCCG
TTCGCGCTGA GCGGCGGCGT CGTGTCGCTG TGGCTGCGCG GGATTCCGCT GTCGATCACG
GCGGCGGTCG GCTTCATCGC GCTGTCCGGC GTGGCCGTGC TCAATGGTCT CGTGATGATC
TCGTTCATCC GTAACCTGCG CGACGAAGGC ATGCCGCTCG ATGCCGCGGT GCACGACGGC
GCGCTCACGC GGCTGCGGCC CGTGCTGATG ACCGCGCTGG TCGCGTCGCT CGGCTTCCTG
CCGATGGCGT TCGCGACCGG CACCGGCGCC GAGGTGCAGC GCCCGCTCGC GACGGTCGTG
ATCGGCGGTA TCCTGTCGTC CACGGCGCTG ACGCTGCTGG TGCTGCCGGT GCTGTACCGG
GTCAGCCATG CGGTGTCGTG GCGCGCGGCG TTGCGCGGCG GCTTCGGCGC GGGCGTGCTG
CGCCGACTGG GTTTTTTCAA GGGTAATGCG TGA
|
|---|
| Protein sequence | MFERLIRFAI AHRWLVMLAI AAVAALGVFS YQRLPIDAVP DITNVQVQIN TSAPGYSPLE
AEQRITYPVE TVMAGLPGLE QTRSISRYGL SQVTVIFKDG TDIYFARQLV NERIQEAKDK
LPPGIAPAMG PTSTGLGEIY LWTVEADANA RKPDGTRYTA ADLRELQDWV VRPQLRNVRG
VTEVNSIGGY VKEYRVAPNP AKLMSYGLTL ADVVRALERN NDNVGAGYIE KRGEQYLVRV
PGQARTVDDI ANIVLTNVGG VPVRMKDVGV VDIGRELRTG AATSNGEEVV LGTVFMLMGE
NSRTVSKAVA AKMEDVNRTL PAGVKAIPVY DRTVLVEKAV ATVKKNLLEG AVLVIAVLFL
FLGNIRAALI TALVIPLSML MTFTGMVNAK VSANLMSLGA LDFGIIVDGA VVIVENCVRR
LAHAQSAAGR PLTRDERFAE VFGASQEARR ALIFGQLIIM VVYLPIFALT GVEGKMFHPM
AITVVMALAA AMVLTVTFIP AAVALFIGER VEEKENRLMG WARRAYEPVL AAFMTRPARV
MIGAGAIVLV TLGLATRLGS EFIPSLNEGD LAVSALRIPG TSLSQSVEMQ KSIEKTLKAR
FPEIERVFAR TGTAEIAADP MPPNLSDGYI MLKPADTWPD PKKPRDQLVR EIEEALAELP
GNAYEFSQPI QLRFNELISG VRSDVAVKIF GDDMAVLNQT GEQIAAALQK VPGASEVKVE
QTTGLPVLTV NLDRDKLARY GVSVADLQDS VAAAVGGQKA GTLFQGDRRF DIVVRLPDEL
RSDIEAIKRL PIALPAPAAG ASAPLAAAPY VPLAELATID VAPGPNQISR EDGKRRVVVS
ANVRGRDVGS FVADAREQLQ QDVRVPAGYW VSWGGQFEQL QSASERLKLV VPLALFMVFV
LLFVMFNNVK DGLLVFTGIP FALSGGVVSL WLRGIPLSIT AAVGFIALSG VAVLNGLVMI
SFIRNLRDEG MPLDAAVHDG ALTRLRPVLM TALVASLGFL PMAFATGTGA EVQRPLATVV
IGGILSSTAL TLLVLPVLYR VSHAVSWRAA LRGGFGAGVL RRLGFFKGNA
|
|---|
| |