Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen_4480 |
Symbol | |
ID | 4094542 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia AU 1054 |
Kingdom | Bacteria |
Replicon accession | NC_008061 |
Strand | - |
Start bp | 1727880 |
End bp | 1730297 |
Gene Length | 2418 bp |
Protein Length | 805 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638017768 |
Product | RNA polymerase sigma factor RpoD |
Protein accession | YP_624335 |
Protein GI | 107026824 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.793179 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAAAGA CGACAGGCGG AAAGAAAGCA ACAGGCAAGG GCTCGACGGA GCCGACCAAG AAGGTCACAG CGGCCAAGTC TGCTTCTTCC ACCAGGACAA CGTCTTCAGC CACGTCAGCC CCTGCAGGAA AGAAAACCGC GGCCGGCACT GCTCAGGCTG CGCCGGCGCC GGCAGCCAGA ACACGGGCTG CCGCCAGACC CGACTCCGGG CCGGCCAAGC CGGCGGCGAA GCGGGCAAGT GCGAAAAGCG CAAGGGACAC GACTGCCGAC GCGGACGAAA CGGCAGTACG TACTACTCAT GCACCCACGG TTCAACCGGC TGTCGTCCAG CAGCCGCGAG TCGATATAGC CGGTACGGCG AACTCCATGA CCAAAAAGCT GAACGAAGTA TCCGTCGAAG ACGACGCAAA TCAGAGCGAC GAGCAGCCCG CAGCCGCGGC TGCACCGGGC AAGTCCAAGG TGCGCGATCG TCGCGCCAAG GAAAAGGCGC TGCTGAAGGA AGCGTTCGCG ACGAGCACGC CGGGCACGGC CGAGGAGCTC GAAGAGCGCC GCGTGAAACT GCGCGCGCTG ATCAAGCTCG GCAAGGAGCG CGGCTTCCTC ACGTACGCCG AAATCAACGA CCACCTGCCG GACAACTTCA CCGAGACGGA AGCCCTCGAG GGCATCATCG GCACGTTCAA CGACATGGGC GTGGCGGTTT ACGAGCAGGC GCCGGACGCG GAAACGCTGC TCCTGAACGA CAACGCGCCC GCCGCGTCGT CGGACGATGA AGTCGAGGAG GAAGCGGAAG TCGCGCTGTC CACCGTCGAT TCGGAATTCG GCCGCACGAC CGATCCGGTC CGGATGTACA TGCGCGAGAT GGGCACGGTC GAGCTGCTCA CGCGCGAAGG CGAAATCGAG ATCGCGAAGC GGATCGAGGA CGGCCTGCGC CACATGGTGA TGGCCATCTC CGCGTGCCCG ACGACGATCG CCGACATCCT CGCGATGGCC GAACGCGTCG CGAACGAAGA GATCCGCGTC GACGAGCTCG TCGACGGCCT GCTCGATCCG AATGCTTCGG ACTCCGCCGA TACGGACGGC TTCTCCGCGA AGGAAGCGGA AGCCATCGAG AACGAGGACG AGGAAGCCGA AGAGGAAGAG GAAGAAGAGG AAGAGGAGGA AGACGACGGT GCCGCGCAGG CATCGGCGAA CGCCGCCCAG CTCGAAGCCC TCAAGCGCGC ATCGCTCGAG AAGTTCTCGC AGATCAGCGA GTGGTTCGAC AAGATGCGCC GCGCGTTCGA GAAGGAAGGC TACAAGTCGA AGGCCTACCT GAAGGCGCAG GAAACGATCC AGAGCGAACT GATGACGATC CGCTTCACCG CGCGTACCGT CGAACGCCTG TGCGACACGC TGCGCGCGCA GGTGGACGAA GTGCGTCAGG TCGAGCGTCA GATCCTGCAC ATCGTCGTCG ACAAGTGCGG CATGCCGCGC TCGGAATTCA TCGCGCGCTT CCCGGGCAGC GAGACGGATC TCGACTGGGC CGAGAAGATC ACCGCGGAAG GCCATCCGTA CAGCGCGGTG CTGTCGCGTA ACGTCCCGGC GATCCGCGAA CAGCAGCAGC GCCTGCTCGA CCTGCAGGCG CGCGTCGTGC TGCCGCTGAA GGACCTGAAG GAAACCAACC GCCAGATGGC GGCCGGCGAA CTGAAGGCGC GTCAGGCGAA GCGCGAAATG ACCGAGGCCA ACCTGCGTCT CGTGATCTCG ATCGCGAAGA AGTACACGAA CCGCGGCCTG CAGTTCCTCG ACCTGATCCA GGAAGGCAAC ATCGGCCTGA TGAAGGCGGT GGACAAGTTC GAATACCGTC GCGGCTACAA GTTCTCGACC TATGCGACGT GGTGGATCCG TCAGGCCATC ACGCGTTCGA TCGCCGACCA GGCGCGCACG ATCCGTATTC CGGTTCACAT GATCGAAACG ATCAACAAGA TGAACCGCAT CTCGCGGCAG ATCCTGCAGG AAACCGGTCT CGAGCCGGAC CCGGCAACGC TCGCCGAGAA GATGGAGATG CCGGAAGACA AGATCCGCAA GATCATGAAG ATCGCGAAGG AGCCGATCTC GATGGAAACG CCGATCGGTG ACGACGACGA TTCCCATCTC GGCGACTTCA TCGAGGACAC CAACACGGTC GCGCCGGCGG ATGCCGCGCC GCATGCCAGC ATGCGCGACG TCGTGAAGGA CGTGCTCGAT TCGCTGACGC CGCGCGAGGC GAAGGTGCTG CGGATGCGTT TCGGTATCGA GATGAGCACC GATCACACGC TCGAGGAAGT CGGCAAGCAG TTCGACGTCA CGCGCGAGCG GATCCGTCAG ATCGAGGCCA AGGCGCTGCG CAAGCTGCGT CACCCGAGCC GTTCCGACAA GCTGAAGTCG TTCCTCGAAG GGAACTGA
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Protein sequence | MAKTTGGKKA TGKGSTEPTK KVTAAKSASS TRTTSSATSA PAGKKTAAGT AQAAPAPAAR TRAAARPDSG PAKPAAKRAS AKSARDTTAD ADETAVRTTH APTVQPAVVQ QPRVDIAGTA NSMTKKLNEV SVEDDANQSD EQPAAAAAPG KSKVRDRRAK EKALLKEAFA TSTPGTAEEL EERRVKLRAL IKLGKERGFL TYAEINDHLP DNFTETEALE GIIGTFNDMG VAVYEQAPDA ETLLLNDNAP AASSDDEVEE EAEVALSTVD SEFGRTTDPV RMYMREMGTV ELLTREGEIE IAKRIEDGLR HMVMAISACP TTIADILAMA ERVANEEIRV DELVDGLLDP NASDSADTDG FSAKEAEAIE NEDEEAEEEE EEEEEEEDDG AAQASANAAQ LEALKRASLE KFSQISEWFD KMRRAFEKEG YKSKAYLKAQ ETIQSELMTI RFTARTVERL CDTLRAQVDE VRQVERQILH IVVDKCGMPR SEFIARFPGS ETDLDWAEKI TAEGHPYSAV LSRNVPAIRE QQQRLLDLQA RVVLPLKDLK ETNRQMAAGE LKARQAKREM TEANLRLVIS IAKKYTNRGL QFLDLIQEGN IGLMKAVDKF EYRRGYKFST YATWWIRQAI TRSIADQART IRIPVHMIET INKMNRISRQ ILQETGLEPD PATLAEKMEM PEDKIRKIMK IAKEPISMET PIGDDDDSHL GDFIEDTNTV APADAAPHAS MRDVVKDVLD SLTPREAKVL RMRFGIEMST DHTLEEVGKQ FDVTRERIRQ IEAKALRKLR HPSRSDKLKS FLEGN
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